Research Area 3
Synthetic and Reconstruction Biology
RA3 will utilize synthetic biology approaches to reconstruct plant signaling and metabolic pathways in orthogonal systems and obtain a quantitative understanding of pathway architectures within and between cells and their surroundings. These quantitative studies are technically challenging to perform on a cellular level in planta due to the molecular complexity of highly interconnected, often multicellular signaling and metabolic networks and pleiotropism. Reconstruction of plant pathways in heterologous systems enables rapid genetic permutation and testing of genetic diversity of cellular components and their directed evolution on a scale/throughput rate that is not possible in planta. RA3 will implement novel genetic, molecular, and imaging tools and approaches such as synthetic switches, promoters, regulatory modules, dynamic and programmable synthetic gene networks, quantitative biosensors, microfluidics, and 2D/3D tissue printing to accelerate scientific progress. These data will be integrated with mathematical modeling (RA4) to complement and inform the in planta studies proposed in RA1 and RA2.
RA3 will transition from the reconstruction of individual pathways (molecular modules) via multiple pathways within a cell (cellular modules) to interactions of a cell with its surroundings (cell-interface modules). In the future, this work will be extended with the development and deployment of printed cell clusters, tissues, and organoids for the study of functional and architectural features emerging from signaling and metabolic networks.
Coordinators
Prof. Dr. Matias Zurbriggen
Institute of Synthetic Biology
Heinrich Heine University Düsseldorf
Prof. Dr. Markus Pauly
Institute for Plant Cell Biology and Biotechnology
Heinrich Heine University Düsseldorf
Members
Dr. Xinhui An
CEPLAS researcher, Research Area 3
Dr. Anupama
CEPLAS Researcher, Research Area 3
Prof. Dr. Ute Armbruster
Principal Investigator, Research Area 1, 3
Prof. Dr. Ilka Axmann
Prof. Dr. George Coupland
Prof. Dr. Gunther Döhlemann
Prof. Dr. Oliver Ebenhöh
Prof. Dr. Michael Feldbrügge
Dr. Pau Formosa-Jordan
Prof. Dr. Wolf B. Frommer
Dr. Rubén Garrido Oter
Josepha Grewer
Doctoral Researcher, Research Area 3
Dr. Thomas Hartwig
Dr. Angela Hay
Dr. Götz Hensel
Prof. Dr. Tatjana Hildebrandt
Prof. Dr. Martin Hülskamp
apl. Prof. Dr. Peter Jahns
Prof. Dr. Stanislav Kopriva
Prof. Dr. Martin Lercher
Dr. Eliza Loo
Group leader, Research Area 2,3
Dr. André Marques
Contributing Investigator, Research Area 3
Dr. Shizue Matsubara
Contributing Investigator, Research Area 1,3
Benjamin Menn
Doctoral Researcher, Research Area 3
Prof. Dr. Jane E. Parker
Prof. Dr. Markus Pauly
Dr. Parisa Rahimzadeh Karvansara
Postdoctoral Researcher, Research Area 1,3
Prof. Dr. Paul Schulze-Lefert
Prof. Dr. Rüdiger Simon
Prof. Dr. Benjamin Stich
Dr. Jędrzej Jakub Szymański
Dr. Elizaveta Terlova
Prof. Dr. Miltos Tsiantis
Principal Investigator, Research Area 1,3,4
Dr. Uriel Urquiza
Dr. Yi Wang
CEPLAS Researcher, Research Area 3, 4