2024

  • Lan T, Walla A, Çolpan Karişan KE, Buchmann G, Wewer V, Metzger S, Haraldsson EB, Helmsorig G, Venkatasubbu T, Simon, R, von Korff M (2024) From Flowering Time to High Temperature Resilience: PHOTOPERIOD 1 (PPD-H1) Controls Spike Fertility through Improving Stress Resistance and Energy Metabolism under High Ambient Temperatures. bioRxiv, 2024-11. doi: 10.1101/2024.11.04.621966
  • Fischer K, Jordbræk SV, Olsen S, Bockwoldt M, Schwacke R, Usadel B, Krause K (2024) Taken to extremes: Loss of plastid rpl32 in Streptophyta and Cuscuta’s unconventional solution for its replacement. Mol. Phyl. Evol. doi: 10.1016/j.ympev.2024.108243
  • Pfennig T, Kullmann E, Zavrel T, Nakielski A, Ebenhöh O, Cerveny J, Bernat G, Matuszynska AB (2024) Shedding light on blue-green photosynthesis: A wavelength-dependent mathematical model of photosynthesis in Synechocystis sp. PCC 6803. PLoS Comput Biol 20(9):e1012445. doi: 10.1371/journal.pcbi.1012445.
  • Freudenthal J, Dumack K, Schaffer S, Schlegel M, Bonkowski M (2024) Algae-fungi symbioses and bacteria-fungi co-exclusion drive tree species-specific differences in canopy bark microbiomes. ISME J. doi: 10.1093/ismejo/wrae206.
  • Damiecki M, Naha R, Schaumkessel Y, Westhoff P, Atanelov N, Stefanski A, Petzsch P, Stuhler K, Kohrer K, Weber AP, Anand R, Reichert AS, Kondadi AK (2024) Mitochondrial apolipoprotein MIC26 is a metabolic rheostat regulating central cellular fuel pathways. Life Sci Alliance 7(12). doi: 10.26508/lsa.202403038.
  • Freya Maria Rosemarie Ziegler,  Vivien Rosenthal,  Jose G Vallarino,  Franziska Genzel, Sarah Spettmann,  Łukasz Seliga,  Sylwia Keller-Przybyłkowicz,  Lucas Munnes, Anita Sønsteby,  Sonia Osorio,  Björn Usadel (2024) A full genome assembly reveals drought stress effects on gene expression and metabolite profiles in blackcurrant (Ribes nigrum L.). Horticulture Research. doi: 10.1093/hr/uhae313
  • Hacquard S, Martin FM (2024) The chemical language of plant-microbe-microbe associations: an introduction to a Virtual Issue. New Phytol 244(3):739-742. doi: 10.1111/nph.20124.
  • Sprent N, Cheung CYM, Shameer S, Ratcliffe RG, Sweetlove JL, Töpfer N (2024) Metabolic modelling reveals distinct roles of sugars and carboxylic acids in stomatal opening and uncovers unexpected carbon fluxes. The Plant Cell. doi: 10.1093/plcell/koae252.
  • X-Min Li, Hannah Jenke, Sören Strauss, Richard S. Smith, Adam Runions, Miltos Tsiantis (2024) Age-associated growth control modifies leaf proximodistal symmetry and enabled leaf shape diversification. Current Biology, Volume 34, Issue 19, doi: 10.1016/j.cub.2024.07.068
  • Mesny F, Bauer M, Zhu J, Thomma B (2024) Meddling with the microbiota: Fungal tricks to infect plant hosts. Curr Opin Plant Biol 82:102622. doi: 10.1016/j.pbi.2024.102622.
  • Weiyi Zhang, Arslan Tariq, Xinxin Yia, Jianbung Yan, Alisdair R. Fernie, Björn Usadel, Weiwei Wen (2024) Plant sperm cell sequencing for genome phasing and determination of meiotic crossover points. Nat Protoc. doi: 10.1038/s41596-024-01063-2
  • Eichfeld R, Mahdi LK, De Quattro C, Armbruster L, Endeshaw AB, Miyauchi S, Hellmann MJ, Cord-Landwehr S, Peterson D, Singan V, Lail K, Savage E, Ng V, Grigoriev IV, Langen G, Moerschbacher BM, Zuccaro A (2024) Transcriptomics reveal a mechanism of niche defense: two beneficial root endophytes deploy an antimicrobial GH18-CBM5 chitinase to protect their hosts. New Phytol. doi: 10.1111/nph.20080.
  • Fichtner F, Humphreys JL, Barbier FF, Feil R, Westhoff P, Moseler A, Lunn JE, Smith SM, Beveridge CA (2024) Strigolactone signalling inhibits trehalose 6-phosphate signalling independently of BRC1 to suppress shoot branching. New Phytol. doi: 10.1111/nph.20072.
  • Tiemblo-Martin M, Pistorio V, Saake P, Mahdi L, Campanero-Rhodes MA, Di Girolamo R, Di Carluccio C, Marchetti R, Molinaro A, Solis D, Zuccaro A, Silipo A (2024) Structure and properties of the exopolysaccharide isolated from Flavobacterium sp. Root935. Carbohydr Polym 343:122433. doi: 10.1016/j.carbpol.2024.122433.
  • Jaillais Y, Bayer E, Bergmann DC, Botella MA, Boutté Y, Bozkurt TO, Caillaud MC, Germain V, Grossmann G, Heilmann I, Hemsley PA, Kirchhelle C, Martinière A, Miao Y, Mongrand S, Müller S, Noack LC, Oda Y, Ott T, Pan X, Pleskot R, Potocky M, Robert S, Rodriguez CS, Simon-Plas F, Russinova E, Van Damme D, Van Norman JM, Weijers D, Yalovsky S, Yang Z, Zelazny E, Gronnier J (2024) Guidelines for naming and studying plasma membrane domains in plants. Nat Plants 10(8):1172-1183. doi: 10.1038/s41477-024-01742-8.
  • Scholten N, Hartmann M, Abts S, Abts L, Reinartz E, Altavilla A, Muller TJJ, Zeier J (2024) In-depth analysis of isochorismate synthase-derived metabolism in plant immunity: Identification of meta-substituted benzoates and salicyloyl-malate. J Biol Chem 300(9):107667. doi: 10.1016/j.jbc.2024.107667.
  • Trofimov K, Mankotia S, Ngigi M, Baby D, Satbhai SB, Bauer P (2024) Shedding Light on Iron Nutrition: Exploring Intersections of transcription factor cascades in light and iron deficiency signaling. J Exp Bot. doi: 10.1093/jxb/erae324.
  • Engelhorn J, Snodgrass JS, Kok A, Seetharam AS, Schneider M, Kiwit T, Singh A, Banf M, Khaipho-Burch M, Runcie DE, Sanchez-Camargo VA, Torres-Rodriguez JV, Sun G, Stam M, Fiorani F, Beier S, Schnable JC, Bass HW, Hufford MB, Stich B, Frommer WB, Ross-Ibarra J, Hartwig T (2024) Genetic variation at transcription factor binding sites largely explains phenotypic heritability in maize. bioRxiv 2023.08.08.551183; doi: 10.1101/2023.08.08.551183
  • van Boerdonk S, Saake P, Wanke A, Neumann U, Zuccaro A (2024) beta-Glucan-binding proteins are key modulators of immunity and symbiosis in mutualistic plant-microbe interactions. Curr Opin Plant Biol 81:102610. doi: 10.1016/j.pbi.2024.102610.
  • Matuszyńska A, Ebenhöh O, Zurbriggen MD, Ducat DC, Axmann IM (2024) A new era of synthetic biology-microbial community design. Synth Biol (Oxf) 9(1):ysae011. doi: 10.1093/synbio/ysae011.
  • Loo EPI, Durán P, Pang TY, Westhoff P, Deng C, Durán C, Lercher M, Garrido-Oter R, Frommer WB (2024) Sugar transporters spatially organize microbiota colonization along the longitudinal root axis of Arabidopsis. Cell Host & Microbe 32(4):543-556.e546. doi: doi.org/10.1016/j.chom.2024.02.014.
  • Hasegawa K, Timmers T, Chai J, Maekawa T (2024) A disease resistance assay in Nicotiana benthamiana reveals the immune function of Response to HopBA1. Plant Physiol. doi: 10.1093/plphys/kiae368.
  • Sun, H., Abeli, P., Campoy, J.A., Rütjes, T., Krause, K., Jiao, W.B., Beaudry, R., Schneeberger, K. (2024) The identification and analysis of meristematic mutations within the apple tree that developed the RubyMac sport mutation. BMC Plant Biol 24, 912 (2024). doi: 10.1186/s12870-024-05628-x
  • Bueno da Silva M, Wiese-Klinkenberg A, Usadel B, Genzel F (2024) Potato Berries as a Valuable Source of Compounds Potentially Applicable in Crop Protection and Pharmaceutical Sectors: A Review. J Agric Food Chem 72(28):15449-15462. doi: 10.1021/acs.jafc.4c03071.
  • Degrune F, Dumack K, Ryo M, Garland G, Romdhane S, Saghai A, Banerjee S, Edlinger A, Herzog C, Pescador DS, Garcia-Palacios P, Fiore-Donno AM, Bonkowski M, Hallin S, van der Heijden MGA, Maestre FT, Philippot L, Glemnitz M, Sieling K, Rillig MC (2024) The impact of fungi on soil protist communities in European cereal croplands. Environ Microbiol 26(7):e16673. doi: 10.1111/1462-2920.16673.
  • Liu Y, Esposto D, Mahdi LK, Porzel A, Stark P, Hussain H, Scherr-Henning A, Isfort S, Bathe U, Acosta IF, Zuccaro A, Balcke GU, Tissier A (2024) Hordedane diterpenoid phytoalexins restrict Fusarium graminearum infection but enhance the colonization by Bipolaris sorkiniana of barley roots. Mol Plant. doi: 10.1016/j.molp.2024.07.006.
  • Rolletschek H, Muszynska A, Schwender J, Radchuk V, Heinemann B, Hilo A, Plutenko I, Keil P, Ortleb S, Wagner S, Kalms L, Gundel A, Shi H, Fuchs J, Szymanski JJ, Braun HP, Borisjuk L (2024) Mechanical forces orchestrate the metabolism of the developing oilseed rape embryo. New Phytol. doi: 10.1111/nph.19990.
  • Goel M, Campoy JA, Krause K, Baus LC, Sahu A, Sun H, Walkemeier B, Marek M, Beaudry R, Ruiz D, Huettel B, Schneeberger K (2024) The vast majority of somatic mutations in plants are layer-specific. Genome Biol 25(1):194. doi: 10.1186/s13059-024-03337-0.
  • Nemati Z, Kazemi-Shahandashti SS, Garibay-Hernandez A, Mock HP, Schmidt MH, Usadel B, Blattner FR (2024) Metabolomic and transcriptomic analyses of yellow-flowered crocuses to infer alternative sources of saffron metabolites. BMC Plant Biol 24(1):369. doi: 10.1186/s12870-024-05036-1.
  • Getzke F, Wang L, Chesneau G, Bohringer N, Mesny F, Denissen N, Wesseler H, Adisa PT, Marner M, Schulze-Lefert P, Schaberle TF, Hacquard S (2024) Physiochemical interaction between osmotic stress and a bacterial exometabolite promotes plant disease. Nat Commun 15(1):4438. doi: 10.1038/s41467-024-48517-5.
  • Hu ZL, Wilson-Sánchez D, Bhatia N, Rast-Somssich MI, Wu A, Vlad D, McGuire L, Nikolov LA, Laufs P, Gan X, Laurent S, Runions A, Tsiantis M. A CUC1/auxin genetic module links cell polarity to patterned tissue growth and leaf shape diversity in crucifer plants. Proc Natl Acad Sci U S A. 2024 Jun 25;121(26):e2321877121. doi: 10.1073/pnas.2321877121.
  • Guichard M, Holla S, Wernerová D, Grossmann G, Minina EA (2024) RoPod, a customizable toolkit for non-invasive root imaging, reveals cell type-specific dynamics of plant autophagy. Sci Rep 14(1):12664. doi: 10.1038/s41598-024-63226-1.
  • Kroll A, Niebuhr N, Butler G, Lercher MJ (2024) SPOT: A machine learning model that predicts specific substrates for transport proteins. PLoS Biol 22(9): e3002807. doi: 10.1371/journal.pbio.3002807  
  • Kindel F, Triesch S, Schlüter U, Randarevitch LA, Reichel-Deland V, Weber APM, Denton AK (2024) Predmoter-cross-species prediction of plant promoter and enhancer regions. Bioinform Adv 4(1):vbae074. doi: 10.1093/bioadv/vbae074.
  • Kopriva S, Rahimzadeh Karvansara P, Takahashi H (2024) Adaptive Modifications in Plant Sulfur Metabolism over Evolutionary Time. J Exp Bot. doi: 10.1093/jxb/erae252.
  • Jakoby M, Stephan L, Heinemann B, Hülskamp M (2024) Mutations in RABE1C suppress the spirrig mutant phenotype. PLoS One 19(6):e0304001. doi: 10.1371/journal.pone.0304001.
  • Arslan Tariq, Minghui Meng, Xiaohui Jiang, Anthony Bolger, Sebastian Beier, Jan P. Buchmann Alisdair R. Fernie, Weiwei Wen, Björn Usadel (2024) In-depth exploration of the genomic diversity in tea varieties based on a newly constructed pangenome of Camellia sinensis, The Plant Journal 119(4). doi: 10.1111/tpj.16874
  • Croce R, Carmo-Silva E, Cho YB, Ermakova M, Harbinson J, Lawson T, McCormick AJ, Niyogi KK, Ort DR, Patel-Tupper D, Pesaresi P, Raines C, Weber APM, Zhu XG (2024) Perspectives on improving photosynthesis to increase crop yield. Plant Cell. doi: 10.1093/plcell/koae132.
  • Gao Y, Stein M, Oshana L, Zhao W, Matsubara S, Stich B (2024) Exploring natural genetic variation in photosynthesis-related traits of barley in the field. J Exp Bot. doi: 10.1093/jxb/erae198.
  • Shen D, Wippel K, Remmel S, Zhang Y, Kuertoes N, Neumann U, Kopriva S, Andersen TG (2024) The Arabidopsis SGN3/GSO1 receptor kinase integrates soil nitrogen status into shoot development. EMBO J. doi: 10.1038/s44318-024-00107-3.
  • Berkova V, Berka M, Stepankova L, Kovac J, Auer S, Mensikova S, Durkovic J, Kopriva S, Ludwig-Müller J, Brzobohaty B, Cerny M (2024) The fungus Acremonium alternatum enhances salt stress tolerance by regulating host redox homeostasis and phytohormone signaling. Physiol Plant 176(3):e14328. doi: 10.1111/ppl.14328.
  • Angermann C, Heinemann B, Hansen J, Töpfer N, Braun HP, Hildebrandt TM (2024) Proteome reorganization and amino acid metabolism during germination and seedling establishment in Lupinus albus. J Exp Bot. doi: 10.1093/jxb/erae197.
  • Werner J, Zuo W, Doehlemann G (2024) CRISPR/Cas9 Ribonucleoprotein-Mediated Mutagenesis in Sporisorium reilianum. Bio Protoc 14(8):e4978. doi: 10.21769/BioProtoc.4978.
  • Peleke FF, Zumkeller SM, Gultas M, Schmitt A, Szymanski J (2024) Deep learning the cis-regulatory code for gene expression in selected model plants. Nat Commun 15(1):3488. doi: 10.1038/s41467-024-47744-0.
  • Lichtblau DM, Baby D, Khan M, Trofimov K, Ari Y, Schwarz B, Bauer P (2024) The small iron-deficiency-induced protein OLIVIA and its relation to the bHLH transcription factor POPEYE. PLoS One 19(4):e0295732. doi: 10.1371/journal.pone.0295732.
  • Zenzen I, Cassol D, Westhoff P, Kopriva S, Ristova D (2024) Transcriptional and metabolic profiling of sulfur starvation response in two monocots. BMC Plant Biol 24(1):257. doi: 10.1186/s12870-024-04948-2.
  • Yuan W, Chen X, Du K, Jiang T, Li M, Cao Y, Li X, Doehlemann G, Fan Z, Zhou T (2024) NIa-Pro of sugarcane mosaic virus targets Corn Cysteine Protease 1 (CCP1) to undermine salicylic acid-mediated defense in maize. PLoS Pathog 20(3):e1012086. doi: 10.1371/journal.ppat.1012086. 
  • Winkler TS, Vollmer SK, Dyballa-Rukes N, Metzger S, Stetter MG (2024) Isoform-resolved genome annotation enables mapping of tissue-specific betalain regulation in amaranth. New Phytol. doi: 10.1111/nph.19736.
  • Uflewski M, Rindfleisch T, Korkmaz K, Tietz E, Mielke S, Correa Galvis V, Dunschede B, Luzarowski M, Skirycz A, Schwarzländer M, Strand DD, Hertle AP, Schunemann D, Walther D, Thalhammer A, Wolff M, Armbruster U (2024) The thylakoid proton antiporter KEA3 regulates photosynthesis in response to the chloroplast energy status. Nat Commun 15(1):2792. doi: 10.1038/s41467-024-47151-5.
  • Shen Q, Hasegawa K, Oelerich N, Prakken A, Tersch LW, Wang J, Reichhardt F, Tersch A, Choo JC, Timmers T, Hofmann K, Parker JE, Chai J, Maekawa T (2024) Cytoplasmic calcium influx mediated by plant MLKLs confers TNL-triggered immunity. Cell Host Microbe. doi: 10.1016/j.chom.2024.02.016.
  • Qiao M, Sun R, Wang Z, Dumack K, Xie X, Dai C, Wang E, Zhou J, Sun B, Peng X, Bonkowski M, Chen Y (2024) Legume rhizodeposition promotes nitrogen fixation by soil microbiota under crop diversification. Nat Commun 15(1):2924. doi: 10.1038/s41467-024-47159-x.
  • Ordon J, Thouin J, Nakano RT, Ma KW, Zhang P, Huettel B, Garrido-Oter R, Schulze-Lefert P (2024) Chromosomal barcodes for simultaneous tracking of near-isogenic bacterial strains in plant microbiota. Nat Microbiol 9(4):1117-1129. doi: 10.1038/s41564-024-01619-8.
  • Jores T, Tonnies J, Mueth NA, Romanowski A, Fields S, Cuperus JT, Queitsch C (2024) Plant enhancers exhibit both cooperative and additive interactions among their functional elements. Plant Cell. doi: 10.1093/plcell/koae088.
  • Lian, Q, Huettel, B, Walkemeier, B, Mayjonade, B, Lopez-Roques, C, Gil, L., Roux, F., Schneeberger, K, Mercier, R (2024) A pan-genome of 69 Arabidopsis thalianaaccessions reveals a conserved genome structure throughout the global species range.Nat Genet 56, 982–991 (2024). doi: 10.1038/s41588-024-01715-9
  • Kunz HH, Armbruster U, Mühlbauer S, de Vries J, Davis GA (2024) Chloroplast ion homeostasis - what do we know and where should we go? New Phytol. doi: 10.1111/nph.19661.
  • Maggiorelli A, Baig N, Prigge V, Bruckmüller J, Stich B (2024) Using drone-retrieved multispectral data for phenomic selection in potato breeding. Theor Appl Genet 137(3):70. doi: 10.1007/s00122-024-04567-3.
  • Busch A, Gerbracht JV, Davies K, Hoecker U, Hess S (2024) Comparative transcriptomics illuminates the cellular responses of an aeroterrestrial zygnematophyte to UV radiation. J Exp Bot. doi: 10.1093/jxb/erae131.
  • Barone GD, Rodriguez-Seijo A, Parati M, Johnston B, Erdem E, Cernava T, Zhu Z, Liu X, Axmann IM, Lindblad P, Radecka I (2024) Harnessing photosynthetic microorganisms for enhanced bioremediation of microplastics: A comprehensive review. Environ Sci Ecotechnol 20:100407. doi: 10.1016/j.ese.2024.100407.
  • Andres J, Schmunk LJ, Grau-Enguix F, Braguy J, Samodelov SL, Blomeier T, Ochoa-Fernandez R, Weber W, Al-Babili S, Alabadi D, Blazquez MA, Zurbriggen MD (2024) Ratiometric gibberellin biosensors for the analysis of signaling dynamics and metabolism in plant protoplasts. Plant J. doi: 10.1111/tpj.16725.
  • Trofimov K, Gratz R, Ivanov R, Stahl Y, Bauer P, Brumbarova T (2024) FER-like iron deficiency-induced transcription factor (FIT) accumulates in nuclear condensates. J Cell Biol 223(4). doi: 10.1083/jcb.202311048. [Abstract]
  • Cosenza F, Shrestha A, Van Inghelandt D, Casale FA, Wu PY, Weisweiler M, Li J, Wespel F, Stich B (2024) Genetic mapping reveals new loci and alleles for flowering time and plant height using the HvDRR population of barley. J Exp Bot. doi: 10.1093/jxb/erae010. [Abstract]
  • Liu W, Giuriani G, Havlikova A, Li D, Lamont DJ, Neugart S, Velanis CN, Petersen J, Hoecker U, Christie JM, Jenkins GI (2024) Phosphorylation of Arabidopsis UVR8 photoreceptor modulates protein interactions and responses to UV-B radiation. Nat Commun 15(1):1221. doi: 10.1038/s41467-024-45575-7. [Abstract]
  • Castellani M, Zhang M, Thangavel G, Mata-Sucre Y, Lux T, Campoy JA, Marek M, Huettel B, Sun H, Mayer KFX, Schneeberger K, Marques A (2024) Meiotic recombination dynamics in plants with repeat-based holocentromeres shed light on the primary drivers of crossover patterning. Nat Plants. doi: 10.1038/s41477-024-01625-y. [Abstract]
  • Torres DE, Kramer HM, Tracanna V, Fiorin GL, Cook DE, Seidl MF, Thomma B (2024) Implications of the three-dimensional chromatin organization for genome evolution in a fungal plant pathogen. Nat Commun 15(1):1701. doi: 10.1038/s41467-024-45884-x. [Abstract]
  • Bohle F, Rossi J, Tamanna SS, Jansohn H, Schlosser M, Reinhardt F, Brox A, Bethmann S, Kopriva S, Trentmann O, Jahns P, Deponte M, Schwarzländer M, Trost P, Zaffagnini M, Meyer AJ, Müller-Schüssele SJ (2024) Chloroplasts lacking class I glutaredoxins are functional but show a delayed recovery of protein cysteinyl redox state after oxidative challenge. Redox Biol 69:103015. doi: 10.1016/j.redox.2023.103015. [Abstract]
  • Chavarro-Carrero EA, Snelders NC, Torres DE, Kraege A, Lopez-Moral A, Petti GC, Punt W, Wieneke J, Garcia-Velasco R, Lopez-Herrera CJ, Seidl MF, Thomma B (2024) The soil-borne white root rot pathogen Rosellinia necatrix expresses antimicrobial proteins during host colonization. PLoS Pathog 20(1):e1011866. doi: 10.1371/journal.ppat.1011866. [Abstract]
  • Lee J, Yang JH, Weber APM, Bhattacharya D, Kim WY, Yoon HS (2024) Diurnal rhythms in the red seaweed Gracilariopsis chorda are characterized by unique regulatory networks of carbon metabolism. Mol Biol Evol. doi: 10.1093/molbev/msae012. [Abstract]
  • Locci F, Parker JE (2024) Plant NLR immunity activation and execution: a biochemical perspective. Open Biol 14(1):230387. doi: 10.1098/rsob.230387. [Abstract]
  • Serra Mari R, Schrinner S, Finkers R, Ziegler FMR, Arens P, Schmidt MH, Usadel B, Klau GW, Marschall T (2024) Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspring data. Genome Biol 25(1):26. doi: 10.1186/s13059-023-03160-z. [Abstract]
  • Triesch S, Denton AK, Bouvier JW, Buchmann JP, Reichel-Deland V, Guerreiro R, Busch N, Schlüter U, Stich B, Kelly S, Weber APM (2024) Transposable elements contribute to the establishment of the glycine shuttle in Brassicaceae species. Plant Biol (Stuttg). doi: 10.1111/plb.13601. [Abstract]
  • Wagner C, Urquiza-Garcia U, Zurbriggen MD, Beyer HM (2024) GMOCU: Digital Documentation, Management, and Biological Risk Assessment of Genetic Parts. Adv Biol (Weinh):e2300529. doi: 10.1002/adbi.202300529. [Abstract]

 

2023

  • Helmsorig G, Walla A, Rütjes T, Buchmann G, Schüller R, Hensel G, von Korff M (2023) early maturity 7 promotes early flowering by controlling the light input into the circadian clock in barley. Plant Physiol 194(2):849-866. doi: 10.1093/plphys/kiad551. [Abstract]
  • Qiu H, Zhang X, Zhang Y, Jiang X, Ren Y, Gao D, Zhu X, Usadel B, Fernie AR, Wen W (2023) Depicting the genetic and metabolic panorama of chemical diversity in the tea plant. Plant Biotechnol J. doi: 10.1111/pbi.14241. [Abstract]
  • Thomas N, Schröder NH, Nowak MK, Wollnitzke P, Ghaderi S, von Wnuck Lipinski K, Wille A, Deister-Jonas J, Vogt J, Gräler MH, Dannenberg L, Buschmann T, Westhoff P, Polzin A, Kelm M, Keul P, Weske S, Levkau B (2023) Sphingosine-1-phosphate suppresses GLUT activity through PP2A and counteracts hyperglycemia in diabetic red blood cells. Nat Commun 14(1):8329. doi: 10.1038/s41467-023-44109-x. [Abstract]
  • Dumschott K, Dorpholz H, Laporte MA, Brilhaus D, Schrader A, Usadel B, Neumann S, Arnaud E, Kranz A (2023) Ontologies for increasing the FAIRness of plant research data. Front Plant Sci 14:1279694. doi: 10.3389/fpls.2023.1279694. [Abstract]
  • Sankaranarayanan S, Kwon S, Heimel K, Feldbrügge M (2023) The RNA world of fungal pathogens. PLoS Path 19(11):e1011762. doi: 10.1371/journal.ppat.1011762. [Abstract]
  • Huang L, Ökmen B, Stolze SC, Kastl M, Khan M, Hilbig D, Nakagami H, Djamei A, Doehlemann G (2023) The fungal pathogen Ustilago maydis targets the maize corepressor RELK2 to modulate host transcription for tumorigenesis. New Phytol. doi: 10.1111/nph.19448. [Abstract]
  • De PS, Glass T, Stein M, Spitzlei T, Raguin A (2023) PREDIG: Web application to model and predict the enzymatic saccharification of plant cell wall. Comput Struct Biotechnol J 21:5463-5475. doi: 10.1016/j.csbj.2023.09.026. [Abstract]
  • Göbel M, Fichtner F (2023) Functions of sucrose and trehalose 6-phosphate in controlling plant development. J Plant Physiol 291:154140. doi: 10.1016/j.jplph.2023.154140. [Abstract]
  • Wanke A, van Boerdonk S, Mahdi LK, Wawra S, Neidert M, Chandrasekar B, Saake P, Saur IML, Derbyshire P, Holton N, Menke FLH, Brands M, Pauly M, Acosta IF, Zipfel C, Zuccaro A (2023) A GH81-type beta-glucan-binding protein enhances colonization by mutualistic fungi in barley. Curr Biol 33(23):5071-5084 e5077. doi: 10.1016/j.cub.2023.10.048. [Abstract]
  • Zeng Y, Zheng Z, Hessler G, Zou K, Leng J, Bautor J, Stuttmann J, Xue L, Parker JE, Cui H (2023) Arabidopsis PAD4 promotes the maturation and nuclear accumulation of immune-related cysteine protease RD19. J Exp Bot. doi: 10.1093/jxb/erad454. [Abstract]
  • von Dahlen JK, Schulz K, Nicolai J, Rose LE (2023) Global expression patterns of R-genes in tomato and potato. Front Plant Sci 14:1216795. doi: 10.3389/fpls.2023.1216795. [Abstract]
  • Maekawa T (2023) Intricate guard-guardee interplay in plant immune signaling. Cell Host Microbe 31(11):1764-1766. doi: 10.1016/j.chom.2023.10.010. [Abstract]
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  • Vasilopoulos G, Heflik L, Czolkoss S, Heinrichs F, Kleetz J, Yesilyurt C, Tischler D, Westhoff P, Exterkate M, Aktas M, Narberhaus F (2023) Characterization of multiple lysophosphatidic acid acyltransferases in the plant pathogen Xanthomonas campestris. FEBS J. doi: 10.1111/febs.16996. [Abstract]
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2022

  • Song C, Zhao J, Guichard M, Shi D, Grossmann G, Schmitt C, Jouannet V, Greb T (2022) Strigo-D2-a bio-sensor for monitoring spatio-temporal strigolactone signaling patterns in intact plants. Plant Physiol 188(1):97-110. doi: 10.1093/plphys/kiab504. [Abstract]
  • Liu S, Strauss S, Adibi M, Mosca G, Yoshida S, Dello Ioio R, Runions A, Andersen TG, Grossmann G, Huijser P, Smith RS, Tsiantis M (2022) Cytokinin promotes growth cessation in the Arabidopsis root. Curr Biol 32(9):1974-1985 e1973. doi: 10.1016/j.cub.2022.03.019. [Abstract]
  • Behle A, Dietsch M, Goldschmidt L, Murugathas W, Berwanger LC, Burmester J, Yao L, Brandt D, Busche T, Kalinowski J, Hudson EP, Ebenhöh O, Axmann IM, Machné R (2022) Manipulation of topoisomerase expression inhibits cell division but not growth and reveals a distinctive promoter structure in Synechocystis. Nucleic Acids Res. doi: 10.1093/nar/gkac1132. [Abstract]
  • Jansing M, Mielenbrink S, Rosenbach H, Metzger S, Span I (2022) Maturation strategy influences expression levels and cofactor occupancy in Fe-S proteins. J Biol Inorg Chem. doi: 10.1007/s00775-022-01972-1. [Abstract]
  • Hornbergs J, Montag K, Loschwitz J, Mohr I, Poschmann G, Schnake A, Gratz R, Brumbarova T, Eutebach M, Angrand K, Fink-Straube C, Stühler K, Zeier J, Hartmann L, Strodel B, Ivanov R, Bauer P (2022) SEC14-GOLD protein PATELLIN2 binds IRON-REGULATED TRANSPORTER1 linking root iron uptake to vitamin E. Plant Physiol. doi: 10.1093/plphys/kiac563. [Abstract]
  • Hwang Y, Han S, Yoo CY, Hong L, You C, Le BH, Shi H, Zhong S, Hoecker U, Chen X, Chen M (2022) Anterograde signaling controls plastid transcription via sigma factors separately from nuclear photosynthesis genes. Nat Commun 13(1):7440. doi: 10.1038/s41467-022-35080-0. [Abstract]
  • Gui S, Martinez-Rivas FJ, Wen W, Meng M, Yan J, Usadel B, Fernie AR (2022) Going broad and deep: sequencing driven insights into plant physiology, evolution and crop domestication. Plant J. doi: 10.1111/tpj.16070. [Abstract]
  • Burkart RC, Eljebbawi A, Stahl Y (2022) Come together now: Dynamic body-formation of key regulators integrates environmental cues in plant development. Front Plant Sci 13:1052107. doi: 10.3389/fpls.2022.1052107. [Abstract]
  • Usadel B (2022) Solanaceae pangenomes are coming of graphical age to bring heritability back. Abiotech 3(4):233-236. doi: 10.1007/s42994-022-00087-0. [Abstract]
  • Göhre V, Weiberg A (2023) RNA Dialogues in Fungal–Plant Relationships. Plant Relationships: Fungal-Plant Interactions, eds Scott B & Mesarich C (Springer International Publishing, Cham), pp 31-51. 10.1007/978-3-031-16503-0_2 [Abstract]
  • Wilken SE, Besancon M, Kratochvil M, Foko Kuate CA, Trefois C, Gu W, Ebenhöh O (2022) Interrogating the effect of enzyme kinetics on metabolism using differentiable constraint-based models. Metab Eng 74:72-82. doi: 10.1016/j.ymben.2022.09.002. [Abstract]
  • Mor E, Pernisova M, Minne M, Cerutti G, Ripper D, Nolf J, Andres J, Ragni L, Zurbriggen MD, De Rybel B, Vernoux T (2022) bHLH heterodimer complex variations regulate cell proliferation activity in the meristems of Arabidopsis thaliana. iScience 25(11):105364. doi: 10.1016/j.isci.2022.105364. [Abstract]
  • Ito S, Braguy J, Wang JY, Yoda A, Fiorilli V, Takahashi I, Jamil M, Felemban A, Miyazaki S, Mazzarella T, Chen GE, Shinozawa A, Balakrishna A, Berqdar L, Rajan C, Ali S, Haider I, Sasaki Y, Yajima S, Akiyama K, Lanfranco L, Zurbriggen MD, Nomura T, Asami T, Al-Babili S (2022) Canonical strigolactones are not the major determinant of tillering but important rhizospheric signals in rice. Sci Adv 8(44):eadd1278. doi: 10.1126/sciadv.add1278. [Abstract]
  • Rawat AA, Hartmann M, Harzen A, Lugan R, Stolze SC, Forzani C, Abts L, Reissenweber S, Rayapuram N, Nakagami H, Zeier J, Hirt H (2022) OXI1 induces immunity by coordinating N-hydroxypipecolic acid, salicylic acid and camalexin synthesis. New Phytol. doi: 10.1111/nph.18592. [Abstract]
  • Snelders NC, Boshoven JC, Song Y, Schmitz N, Fiorin GL, Rövenich H, van den Berg GCM, Torres DE, Petti GC, Prockl Z, Faino L, Seidl MF, Thomma B (2022) A highly polymorphic effector protein promotes fungal virulence through suppression of plant-associated Actinobacteria. New Phytol. doi: 10.1111/nph.18576. [Abstract]
  • Günal S, Kopriva S (2022) Measurement of flux through sulfate assimilation using [(35)S]sulfate. Methods Enzymol 676:197-209. doi: 10.1016/bs.mie.2022.07.021. [Abstract]
  • Dumack K, Feng K, Flues S, Sapp M, Schreiter S, Grosch R, Rose LE, Deng Y, Smalla K, Bonkowski M (2022) What Drives the Assembly of Plant-associated Protist Microbiomes? Investigating the Effects of Crop Species, Soil Type and Bacterial Microbiomes. Protist 173(6):125913. doi: 10.1016/j.protis.2022.125913. [Abstract]
  • Johanndrees O, Baggs EL, Uhlmann C, Locci F, Lassle HL, Melkonian K, Kaufer K, Dongus JA, Nakagami H, Krasileva KV, Parker JE, Lapin D (2022) Variation in plant Toll/Interleukin-1 receptor domain protein dependence on ENHANCED DISEASE SUSCEPTIBILITY 1. Plant Physiol. doi: 10.1093/plphys/kiac480. [Abstract]
  • Pavlu J, Kerchev P, Cerny M, Novak J, Berka M, Jobe TO, Lopez Ramos JM, Saiz-Fernandez I, Michael Rashotte A, Kopriva S, Brzobohaty B (2022) Cytokinin modulates sulfur and glutathione metabolic network. J Exp Bot. doi: 10.1093/jxb/erac391. [Abstract]
  • Maekawa T, Kashkar H, Coll NS (2022) Dying in self-defence: a comparative overview of immunogenic cell death signalling in animals and plants. Cell Death Differ. doi: 10.1038/s41418-022-01060-6. [Abstract]
  • Lu J, Wen CK, Groth G (2022) New Insights into Phase Separation Processes and Membraneless Condensates of EIN2. Plants (Basel) 11(16). doi: 10.3390/plants11162149. [Abstract]
  • Zönnchen J, Gantner J, Lapin D, Barthel K, Eschen-Lippold L, Erickson JL, Landeo Villanueva S, Zantop S, Kretschmer C, Joosten M, Parker JE, Guerois R, Stuttmann J (2022) EDS1 complexes are not required for PRR responses and execute TNL-ETI from the nucleus in Nicotiana benthamiana. New Phytol. doi: 10.1111/nph.18511. [Abstract]
  • Tian H, Fiorin GL, Kombrink A, Mesters JR, Thomma B (2022) Fungal dual-domain LysM effectors undergo chitin-induced intermolecular, and not intramolecular, dimerization. Plant Physiol. doi: 10.1093/plphys/kiac391. [Abstract]
  • Blankenagel S, Eggels S, Frey M, Grill E, Bauer E, Dawid C, Fernie AR, Haberer G, Hammerl R, Barbosa Medeiros D, Ouzunova M, Presterl T, Russ V, Schaufele R, Schlüter U, Tardieu F, Urbany C, Urzinger S, Weber APM, Schön CC, Avramova V (2022) Natural alleles of the abscisic acid catabolism gene ZmAbh4 modulate water use efficiency and carbon isotope discrimination in maize. Plant Cell. doi: 10.1093/plcell/koac200. [Abstract]
  • Depotter JRL, Ökmen B, Ebert MK, Beckers J, Kruse J, Thines M, Doehlemann G (2022) High Nucleotide Substitution Rates Associated with Retrotransposon Proliferation Drive Dynamic Secretome Evolution in Smut Pathogens. Microbiol Spectr:e0034922. doi: 10.1128/spectrum.00349-22. [Abstract]
  • Bindics J, Khan M, Uhse S, Kogelmann B, Baggely L, Reumann D, Ingole KD, Stirnberg A, Rybecky A, Darino M, Navarrete F, Doehlemann G, Djamei A (2022) Many ways to TOPLESS - manipulation of plant auxin signalling by a cluster of fungal effectors. New Phytol. doi: 10.1111/nph.18315. [Abstract]
  • Platre MP, Satbhai SB, Brent L, Gleason MF, Cao M, Grison M, Glavier M, Zhang L, Gaillochet C, Goeschl C, Giovannetti M, Enugutti B, Neveu J, von Reth M, Alcazar R, Parker JE, Vert G, Bayer E, Busch W (2022) The receptor kinase SRF3 coordinates iron-level and flagellin dependent defense and growth responses in plants. Nat Commun 13(1):4445. doi: 10.1038/s41467-022-32167-6. [Abstract]
  • Moormann J, Heinemann B, Hildebrandt TM (2022) News about amino acid metabolism in plant–microbe interactions. Trends Biochem Sci. doi: doi.org/10.1016/j.tibs.2022.07.001. [Abstract]
  • Loo EP-I, Tajima Y, Yamada K, Kido S, Hirase T, Ariga H, Fujiwara T, Tanaka K, Taji T, Somssich IE, Parker JE, Saijo Y (2022) Recognition of Microbe- and Damage-Associated Molecular Patterns by Leucine-Rich Repeat Pattern Recognition Receptor Kinases Confers Salt Tolerance in Plants. Molecular Plant-Microbe Interactions® 35(7):554-566. doi: 10.1094/mpmi-07-21-0185-fi. [Abstract]
  • Viñegra de la Torre N, Vayssières A, Obeng-Hinneh E, Neumann U, Zhou Y, Lázaro A, Roggen A, Sun H, Stolze SC, Nakagami H, Schneeberger K, Timmers T, Albani MC (FLOWERING REPRESSOR AAA+ ATPase 1 is a novel regulator of perennial flowering in Arabis alpina. New Phytologist n/a(n/a). doi: doi.org/10.1111/nph.18374. [Abstract]
  • Huang S, Jia A, Song W, Hessler G, Meng Y, Sun Y, Xu L, Laessle H, Jirschitzka J, Ma S, Xiao Y, Yu D, Hou J, Liu R, Sun H, Liu X, Han Z, Chang J, Parker JE, Chai J (2022) Identification and receptor mechanism of TIR-catalyzed small molecules in plant immunity. Science 0(0):eabq3297. doi: doi:10.1126/science.abq3297. [Abstract]
  • Jia A, Huang S, Song W, Wang J, Meng Y, Sun Y, Xu L, Laessle H, Jirschitzka J, Hou J, Zhang T, Yu W, Hessler G, Li E, Ma S, Yu D, Gebauer J, Baumann U, Liu X, Han Z, Chang J, Parker JE, Chai J (2022) TIR-catalyzed ADP-ribosylation reactions produce signaling molecules for plant immunity. Science 0(0):eabq8180. doi: doi:10.1126/science.abq8180. [Abstract]
  • Blankenagel S, Eggels S, Frey M, Grill E, Bauer E, Dawid C, Fernie AR, Haberer G, Hammerl R, Barbosa Medeiros D, Ouzunova M, Presterl T, Russ V, Schaufele R, Schlüter U, Tardieu F, Urbany C, Urzinger S, Weber APM, Schön CC, Avramova V (2022) Natural alleles of the abscisic acid catabolism gene ZmAbh4 modulate water use efficiency and carbon isotope discrimination in maize. Plant Cell. doi: 10.1093/plcell/koac200. [Abstract]
  • Duran P, Ellis TJ, Thiergart T, Agren J, Hacquard S (2022) Climate drives rhizosphere microbiome variation and divergent selection between geographically distant Arabidopsis populations. New Phytol. doi: 10.1111/nph.18357. [Abstract]
  • Qian P, Song W, Zaizen-Iida M, Kume S, Wang G, Zhang Y, Kinoshita-Tsujimura K, Chai J, Kakimoto T (2022) A Dof-CLE circuit controls phloem organization. Nat Plants 8(7):817-827. doi: 10.1038/s41477-022-01176-0. [Abstract]
  • Pérez-Antón M, Schneider I, Kroll P, Hofhuis H, Metzger S, Pauly M, Hay A (2022) Explosive seed dispersal depends on SPL7 to ensure sufficient copper for localized lignin deposition via laccases. Proceedings of the National Academy of Sciences 119(24):e2202287119. doi: doi:10.1073/pnas.2202287119. [Abstract]
  • Llamas E, Pulido P (2022) A proteostasis network safeguards the chloroplast proteome. Essays Biochem. doi: 10.1042/EBC20210058. [Abstract]
  • Schrinner S, Serra Mari R, Finkers R, Arens P, Usadel B, Marschall T, Klau GW (2022) Genetic polyploid phasing from low-depth progeny samples. iScience 25(6):104461. doi: 10.1016/j.isci.2022.104461. [Abstract]
  • Senger E, Osorio S, Olbricht K, Shaw P, Denoyes B, Davik J, Predieri S, Karhu S, Raubach S, Lippi N, Hofer M, Cockerton H, Pradal C, Kafkas E, Litthauer S, Usadel B, Mezzetti B (2022) Towards smart and sustainable development of modern berry cultivars in Europe. Plant J. doi: 10.1111/tpj.15876. [Abstract]
  • Trimborn L, Hoecker U, Ponnu J (2022) A Simple Quantitative Assay for Measuring beta-Galactosidase Activity Using X-Gal in Yeast-Based Interaction Analyses. Curr Protoc 2(5):e421. doi: 10.1002/cpz1.421. [Abstract]
  • Wammers M, Schupp AK, Bode JG, Ehlting C, Wolf S, Deenen R, Köhrer K, Häussinger D, Graf D (2022) Author Correction: Reprogramming of pro-inflammatory human macrophages to an anti-inflammatory phenotype by bile acids. Sci Rep 12(1):7255. doi: 10.1038/s41598-022-10306-9. [Abstract]
  • Mühlhaus T, Brillhaus D, Tschöpe M, Maus O, Grüning B, Garth C, Rodrigues CM, Suchodoletz Dv (2022) DataPLANT – Tools and Services to structure the Data Jungle for fundamental plant researchers. E-Science-Tage 2021: Share Your Research Data,  (Vincent Heuveline, Nina Bisheh, Heidelberg: heiBOOKS), pp 132-145. doi.org/10.11588/heibooks.979.c13724[Abstract]
  • Suchodoletz Dv, Mühlhaus T, Brilhaus D, Jabeen H, Usadel B, Krüger J, Gauza H, Rodrigues CM (2022) Data Stewards as ambassadors between the NFDI and the community. E-Science-Tage 2021: Share Your Research Data,  (Vincent Heuveline, Nina Bisheh, Heidelberg: heiBOOKS), pp 358-365. doi.org/10.11588/heibooks.979.c13750[Abstract]
  • Saadat NP, van Aalst M, Ebenhöh O (2022) Network Reconstruction and Modelling Made Reproducible with moped. Metabolites 12(4). doi: 10.3390/metabo12040275. [Abstract]
  • Chandrasekar B, Wanke A, Wawra S, Saake P, Mahdi L, Charura N, Neidert M, Poschmann G, Malisic M, Thiele M, Stühler K, Dama M, Pauly M, Zuccaro A (2022) Fungi hijack a ubiquitous plant apoplastic endoglucanase to release a ROS scavenging beta-glucan decasaccharide to subvert immune responses. Plant Cell. doi: 10.1093/plcell/koac114. [Abstract]
  • Bradley EL, Ökmen B, Doehlemann G, Henrissat B, Bradshaw RE, Mesarich CH (2022) Secreted Glycoside Hydrolase Proteins as Effectors and Invasion Patterns of Plant-Associated Fungi and Oomycetes. Front Plant Sci 13:853106. doi: 10.3389/fpls.2022.853106. [Abstract]
  • Sang Q, Vayssieres A, O'Maoileidigh DS, Yang X, Vincent C, Bertran Garcia de Olalla E, Cerise M, Franzen R, Coupland G (2022) microRNA172 controls inflorescence meristem size through regulation of APETALA2 in Arabidopsis. New Phytol. doi: 10.1111/nph.18111. [Abstract]
  • Wu PY, Stich B, Weisweiler M, Shrestha A, Erban A, Westhoff P, Inghelandt DV (2022) Improvement of prediction ability by integrating multi-omic datasets in barley. BMC Genomics 23(1):200. doi: 10.1186/s12864-022-08337-7. [Abstract]
  • Sun H, Jiao WB, Krause K, Campoy JA, Goel M, Folz-Donahue K, Kukat C, Huettel B, Schneeberger K (2022) Chromosome-scale and haplotype-resolved genome assembly of a tetraploid potato cultivar. Nat Genet 54(3):342-348. doi: 10.1038/s41588-022-01015-0. [Abstract]
  • Dongus JA, Bhandari DD, Penner E, Lapin D, Stolze SC, Harzen A, Patel M, Archer L, Dijkgraaf L, Shah J, Nakagami H, Parker JE (2022) Cavity surface residues of PAD4 and SAG101 contribute to EDS1 dimer signaling specificity in plant immunity. Plant J. doi: 10.1111/tpj.15747. [Abstract]
  • Ponnu J, Hoecker U (2022) Signaling Mechanisms by Arabidopsis Cryptochromes. Front Plant Sci 13:844714. doi: 10.3389/fpls.2022.844714. [Abstract]
  • Almario J, Fabianska I, Saridis G, Bucher M (2022) Unearthing the plant-microbe quid pro quo in root associations with beneficial fungi. New Phytol. doi: 10.1111/nph.18061. [Abstract]
  • Wotzel S, Andrello M, Albani MC, Koch MA, Coupland G, Gugerli F (2022) Arabis alpina: A perennial model plant for ecological genomics and life-history evolution. Mol Ecol Resour 22(2):468-486. doi: 10.1111/1755-0998.13490. [Abstract]
  • Andres J, Zurbriggen MD (2022) Genetically Encoded Biosensors for the Quantitative Analysis of Auxin Dynamics in Plant Cells. Methods Mol Biol 2379:183-195. doi: 10.1007/978-1-0716-1791-5_11. [Abstract]
  • Kramer HM, Seidl MF, Thomma B, Cook DE (2022) Local Rather than Global H3K27me3 Dynamics Are Associated with Differential Gene Expression in Verticillium dahliae. mBio:e0356621. doi: 10.1128/mbio.03566-21. [Abstract]
  • Kuhnert F, Weber APM (2022) In Vivo Epitope Tagging of Plant Mitochondria. Methods Mol Biol 2379:253-264. doi: 10.1007/978-1-0716-1791-5_14. [Abstract]
  • Lapin D, Johanndrees O, Wu Z, Li X, Parker JE (2022) Molecular innovations in plant TIR-based immunity signaling. Plant Cell. doi: 10.1093/plcell/koac035. [Abstract]
  • Ma KW, Ordon J, Schulze-Lefert P (2022) Gnotobiotic Plant Systems for Reconstitution and Functional Studies of the Root Microbiota. Curr Protoc 2(2):e362. doi: 10.1002/cpz1.362. [Abstract]
  • Miras M, Pottier M, Schladt TM, Ejike JO, Redzich L, Frommer WB, Kim JY (2022) Plasmodesmata and their role in assimilate translocation. J Plant Physiol 270:153633. doi: 10.1016/j.jplph.2022.153633. [Abstract]
  • Saur IML, Lawson AW, Schulze-Lefert P (2022) Buy one, get two. Nat Plants. doi: 10.1038/s41477-022-01097-y. [Abstract]
  • Durán P, Flores-Uribe J, Wippel K, Zhang P, Guan R, Melkonian B, Melkonian M, Garrido-Oter R (2022) Shared features and reciprocal complementation of the Chlamydomonas and Arabidopsis microbiota. Nature Communications 13(1):406. doi: 10.1038/s41467-022-28055-8. [Abstract]
  • Park J, Chavez TM, Guistwhite JA, Gwon S, Frommer WB, Cheung LS (2022) Development and quantitative analysis of a biosensor based on the Arabidopsis SWEET1 sugar transporter. Proc Natl Acad Sci U S A 119(4). doi: 10.1073/pnas.2119183119. [Abstract]
  • Kuzay S, Lin H, Li C, Chen S, Woods DP, Zhang J, Lan T, von Korff M, Dubcovsky J (2022) WAPO-A1 is the causal gene of the 7AL QTL for spikelet number per spike in wheat. PLoS Genet 18(1):e1009747. doi: 10.1371/journal.pgen.1009747. [Abstract]
  • Kuhnert F, Weber APM (2022) Isolation of Plant Mitochondria Using Affinity Purification. Methods Mol Biol 2363:25-37. doi: 10.1007/978-1-0716-1653-6_3. [Abstract]
  • Vanacore A, Vitiello G, Wanke A, Cavasso D, Clifton LA, Mahdi L, Campanero-Rhodes MA, Solis D, Wuhrer M, Nicolardi S, Molinaro A, Marchetti R, Zuccaro A, Paduano L, Silipo A (2022) Lipopolysaccharide O-antigen molecular and supramolecular modifications of plant root microbiota are pivotal for host recognition. Carbohydr Polym 277:118839. doi: 10.1016/j.carbpol.2021.118839. [Abstract]

2021

  • Sadoine M, Ishikawa Y, Kleist TJ, Wudick MM, Nakamura M, Grossmann G, Frommer WB, Ho CH (2021) Designs, applications, and limitations of genetically encoded fluorescent sensors to explore plant biology. Plant Physiol 187(2):485-503. doi: 10.1093/plphys/kiab353. [Abstract]
  • Schlegel J, Denay G, Wink R, Pinto KG, Stahl Y, Schmid J, Blumke P, Simon RG (2021) Control of Arabidopsis shoot stem cell homeostasis by two antagonistic CLE peptide signalling pathways. Elife 10. doi: 10.7554/eLife.70934. [Abstract]
  • Roszak P, Heo JO, Blob B, Toyokura K, Sugiyama Y, de Luis Balaguer MA, Lau WWY, Hamey F, Cirrone J, Madej E, Bouatta AM, Wang X, Guichard M, Ursache R, Tavares H, Verstaen K, Wendrich J, Melnyk CW, Oda Y, Shasha D, Ahnert SE, Saeys Y, De Rybel B, Heidstra R, Scheres B, Grossmann G, Mahonen AP, Denninger P, Gottgens B, Sozzani R, Birnbaum KD, Helariutta Y (2021) Cell-by-cell dissection of phloem development links a maturation gradient to cell specialization. Science 374(6575):eaba5531. doi: 10.1126/science.aba5531. [Abstract]
  • Parker JE, Hessler G, Cui H (2021) A new biochemistry connecting pathogen detection to induced defense in plants. New Phytol. doi: 10.1111/nph.17924. [Abstract]
  • Bao H, Morency M, Rianti W, Saeheng S, Roje S, Weber APM, Walker BJ (2021) Catalase protects against nonenzymatic decarboxylations during photorespiration in Arabidopsis thaliana. Plant Direct 5(12):e366. doi: 10.1002/pld3.366. [Abstract]
  • Freire R, Weisweiler M, Guerreiro R, Baig N, Hüttel B, Obeng-Hinneh E, Renner J, Hartje S, Muders K, Truberg B, Rosen A, Prigge V, Bruckmüller J, Lübeck J, Stich B (2021) Chromosome-scale reference genome assembly of a diploid potato clone derived from an elite variety. G3 (Bethesda) 11(12). doi: 10.1093/g3journal/jkab330. [Abstract]
  • Wolinska KW, Vannier N, Thiergart T, Pickel B, Gremmen S, Piasecka A, Pislewska-Bednarek M, Nakano RT, Belkhadir Y, Bednarek P, Hacquard S (2021) Tryptophan metabolism and bacterial commensals prevent fungal dysbiosis in Arabidopsis roots. Proc Natl Acad Sci U S A 118(49). doi: 10.1073/pnas.2111521118. [Abstract]
  • Li K, Debernardi JM, Li C, Lin H, Zhang C, Jernstedt J, Korff MV, Zhong J, Dubcovsky J (2021) Interactions between SQUAMOSA and SHORT VEGETATIVE PHASE MADS-box proteins regulate meristem transitions during wheat spike development. Plant Cell 33(12):3621-3644. doi: 10.1093/plcell/koab243. [Abstract]
  • Nezamivand-Chegini M, Ebrahimie E, Tahmasebi A, Moghadam A, Eshghi S, Mohammadi-Dehchesmeh M, Kopriva S, Niazi A (2021) New insights into the evolution of SPX gene family from algae to legumes; a focus on soybean. BMC Genomics 22(1):915. doi: 10.1186/s12864-021-08242-5. [Abstract]
  • Snelders NC, Petti GC, van den Berg GCM, Seidl MF, Thomma B (2021) An ancient antimicrobial protein co-opted by a fungal plant pathogen for in planta mycobiome manipulation. Proc Natl Acad Sci U S A 118(49). doi: 10.1073/pnas.2110968118. [Abstract]
  • Higashiyama T, Maizel A, Simon R (2021) Seeing is Believing: Advances in Plant Imaging Technologies. Plant Cell Physiol 62(8):1217-1220. doi: 10.1093/pcp/pcab133. [Abstract]
  • Behle E, Raguin A (2021) Stochastic model of lignocellulosic material saccharification. PLoS Comput Biol 17(9):e1009262. doi: 10.1371/journal.pcbi.1009262. [Abstract]
  • Thomas OS, Rebmann B, Tonn M, Schirmeister IC, Wehrle S, Becker J, Zea Jimenez GJ, Hook S, Jäger S, Klenzendorf M, Laskowski M, Kaier A, Pütz G, Zurbriggen MD, Weber W, Hörner M, Wagner HJ (2021) Reversible Shielding and Immobilization of Liposomes and Viral Vectors by Tailored Antibody-Ligand Interactions. Small:e2105157. doi: 10.1002/smll.202105157. [Abstract]
  • Mesny F, Miyauchi S, Thiergart T, Pickel B, Atanasova L, Karlsson M, Hüttel B, Barry KW, Haridas S, Chen C, Bauer D, Andreopoulos W, Pangilinan J, LaButti K, Riley R, Lipzen A, Clum A, Drula E, Henrissat B, Kohler A, Grigoriev IV, Martin FM, Hacquard S (2021) Genetic determinants of endophytism in the Arabidopsis root mycobiome. Nat Commun 12(1):7227. doi: 10.1038/s41467-021-27479-y. [Abstract]
  • Dao O, Kuhnert F, Weber APM, Peltier G, Li-Beisson Y (2021) Physiological functions of malate shuttles in plants and algae. Trends Plant Sci. doi: 10.1016/j.tplants.2021.11.007. [Abstract]
  • Fujihara R, Uchida N, Tameshige T, Kawamoto N, Hotokezaka Y, Higaki T, Simon R, Torii KU, Tasaka M, Aida M (2021) The boundary-expressed EPIDERMAL PATTERNING FACTOR-LIKE2 gene encoding a signaling peptide promotes cotyledon growth during Arabidopsis thaliana embryogenesis. Plant Biotechnol (Tokyo) 38(3):317-322. doi: 10.5511/plantbiotechnology.21.0508a. [Abstract]
  • Wippel K, Tao K, Niu Y, Zgadzaj R, Kiel N, Guan R, Dahms E, Zhang P, Jensen DB, Logemann E, Radutoiu S, Schulze-Lefert P, Garrido-Oter R (2021) Host preference and invasiveness of commensal bacteria in the Lotus and Arabidopsis root microbiota. Nat Microbiol 6(9):1150-1162. doi: 10.1038/s41564-021-00941-9. [Abstract]
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2020

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  • Pastorczyk M, Kosaka A, Pislewska-Bednarek M, Lopez G, Frerigmann H, Kulak K, Glawischnig E, Molina A, Takano Y, Bednarek P (2020) The role of CYP71A12 monooxygenase in pathogen-triggered tryptophan metabolism and Arabidopsis immunity. New Phytol 225(1):400-412. doi: 10.1111/nph.16118. [Abstract]
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2019

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  • Hartmann M, Zeier J (2019) N-hydroxypipecolic acid and salicylic acid: a metabolic duo for systemic acquired resistance. Curr Opin Plant Biol 50:44-57. [Abstract]
  • Andres J, Blomeier T, Zurbriggen MD (2019) Synthetic Switches and Regulatory Circuits in Plants. Plant Physiol 179(3):862-884. [Abstract]
  • Berens ML, Wolinska KW, Spaepen S, Ziegler J, Nobori T, Nair A, Kruler V, Winkelmüller TM, Wang Y, Mine A, Becker D, Garrido-Oter R, Schulze-Lefert P, Tsuda K (2019) Balancing trade-offs between biotic and abiotic stress responses through leaf age-dependent variation in stress hormone cross-talk. Proc Natl Acad Sci U S A 116(6):2364-2373. [Abstract]
  • Charton L, Plett A, Linka N (2019) Plant peroxisomal solute transporter proteins. J Integr Plant Biol. doi: 10.1111/jipb.12790. [Abstract]
  • Gräfe K, Shanmugarajah K, Zobel T, Weidtkamp-Peters S, Kleinschrodt D, Smits SHJ, Schmitt L (2019) Cloning and expression of selected ABC transporters from the Arabidopsis thaliana ABCG family in Pichia pastoris. PLoS One 14(1):e0211156. [Abstract]
  • Hörner M, Raute K, Hummel B, Madl J, Creusen G, Thomas OS, Christen EH, Hotz N, Gübeli RJ, Engesser R, Rebmann B, Lauer J, Rolauffs B, Timmer J, Schamel WWA, Pruszak J, Römer W, Zurbriggen MD, Friedrich C, Walther A, Minguet S, Sawarkar R, Weber W (2019) Phytochrome-Based Extracellular Matrix with Reversibly Tunable Mechanical Properties. Adv Mater:e1806727. [Abstract]
  • Hughes PW, Soppe WJJ, Albani MC (2019) Seed traits are pleiotropically regulated by the flowering time gene PERPETUAL FLOWERING 1 (PEP1) in the perennial Arabis alpina. Mol Ecol. doi: 10.1111/mec.15034. [Abstract]
  • Lachmann SC, Mettler-Altmann T, Wacker A, Spijkerman E (2019) Nitrate or ammonium: Influences of nitrogen source on the physiology of a green alga. Ecol Evol 9(3):1070-1082. [Abstract]
  • Müller J, Pohlmann T, Feldbrügge M (2019) Core components of endosomal mRNA transport are evolutionarily conserved in fungi. Fungal Genet Biol 126:12-16. [Abstract]
  • Saur IM, Bauer S, Kracher B, Lu X, Franzeskakis L, Müller MC, Sabelleck B, Kümmel F, Panstruga R, Maekawa T, Schulze-Lefert P (2019) Multiple pairs of allelic MLA immune receptor-powdery mildew AVRA effectors argue for a direct recognition mechanism. Elife 8. doi: 10.7554/eLife.44471 [Abstract]
  • Strenkert D, Schmollinger S, Gallaher SD, Salomé PA, Purvine SO, Nicora CD, Mettler-Altmann T, Soubeyrand E, Weber APM, Lipton MS, Basset GJ, Merchant SS (2019) Multiomics resolution of molecular events during a day in the life of Chlamydomonas. Proceedings of the National Academy of Sciences 116(6):2374-2383. [Abstract]
  • Uemura T, Nakano RT, Takagi J, Wang Y, Kramer K, Finkemeier I, Nakagami H, Tsuda K, Ueda T, Schulze-Lefert P, Nakano A (2019) A Golgi-Released Subpopulation of the Trans-Golgi Network Mediates Protein Secretion in Arabidopsis. Plant Physiol 179(2):519-532. [Abstract]
  • Wawra S, Fesel P, Widmer H, Neumann U, Lahrmann U, Becker S, Hehemann JH, Langen G, Zuccaro A (2019) FGB1 and WSC3 are in planta-induced beta-glucan-binding fungal lectins with different functions. New Phytol. doi: 10.1111/nph.15711 [Abstract]
  • Gratz R, Manishankar P, Ivanov R, Koster P, Mohr I, Trofimov K, Steinhorst L, Meiser J, Mai HJ, Drerup M, Arendt S, Holtkamp M, Karst U, Kudla J, Bauer P, Brumbarova T (2019) CIPK11-Dependent Phosphorylation Modulates FIT Activity to Promote Arabidopsis Iron Acquisition in Response to Calcium Signaling. Dev Cell. doi: 10.1016/j.devcel.2019.01.006 [Abstract]
  • Fabianska I, Gerlach N, Almario J, Bucher M (2019) Plant-mediated effects of soil phosphorus on the root-associated fungal microbiota in Arabidopsis thaliana. New Phytol 221(4):2123-2137. doi: 10.1111/nph.15538. [Abstract]
  • Nikolov LA, Shushkov P, Nevado B, Gan X, Al-Shehbaz IA, Filatov D, Bailey CD, Tsiantis M (2019) Resolving the backbone of the Brassicaceae phylogeny for investigating trait diversity. New Phytol 222(3):1638-1651. doi: 10.1111/nph.15732. [Abstract]
  • Hyun Y, Vincent C, Tilmes V, Bergonzi S, Kiefer C, Richter R, Martinez-Gallegos R, Severing E, Coupland G (2019) A regulatory circuit conferring varied flowering response to cold in annual and perennial plants. Science 363(6425):409-412. [Abstract]
  • Nizam S, Qiang X, Wawra S, Nostadt R, Getzke F, Schwanke F, Dreyer I, Langen G, Zuccaro A (2019) Serendipita indica E5'NT modulates extracellular nucleotide levels in the plant apoplast and affects fungal colonization. EMBO Rep. doi. 10.15252/embr.201847430 [Abstract]
  • Courville KJ, Frantzeskakis L, Gul S, Haeger N, Kellner R, Heßler N, Day B, Usadel B, Gupta YK, van Esse HP, Brachmann A, Kemen E, Feldbrügge M, Göhre V (2019) Smut infection of perennial hosts: the genome and the transcriptome of the Brassicaceae smut fungus Thecaphora thlaspeos reveal functionally conserved and novel effectors. New Phytologist. doi: doi:10.1111/nph.15692 [Abstract]
  • D'Hooghe P, Picot D, Brunel-Muguet S, Kopriva S, Avice JC, Trouverie J (2019) Germinative and Post-Germinative Behaviours of Brassica napus Seeds Are Impacted by the Severity of S Limitation Applied to the Parent Plants. Plants (Basel) 8(1). [Abstract]
  • Eisenhut M, Weber APM (2019) Improving crop yield. Science 363(6422):32-33. [Abstract]
  • Levey M, Timm S, Mettler-Altmann T, Luca Borghi G, Koczor M, Arrivault S, PM Weber A, Bauwe H, Gowik U, Westhoff P (2019) Efficient 2-phosphoglycolate degradation is required to maintain carbon assimilation and allocation in the C4 plant Flaveria bidentis. J Exp Bot 70(2):575-587. [Abstract]
  • Maekawa T, Kracher B, Saur IML, Yoshikawa-Maekawa M, Kellner R, Pankin A, von Korff M, Schulze-Lefert P (2019) Subfamily-Specific Specialization of RGH1/MLA Immune Receptors in Wild Barley. Mol Plant Microbe Interact 32(1):107-119. [Abstract]
  • Nagy P, Schwarz G, Kopriva S (2019) Highlighted mechanistic aspects in the chemical biology of reactive sulfur species. Br J Pharmacol 176(4):511-513. [Abstract]
  • Schlüter U, Bräutigam A, Droz JM, Schwender J, Weber APM (2019) The role of alanine and aspartate aminotransferases in C4 photosynthesis. Plant Biol (Stuttg) 21 Suppl 1:64-76. [Abstract]
  • Yazdanpanah F, Maurino VG, Mettler-Altmann T, Buijs G, Bailly MN, Karimi Jashni M, Willems L, Sergeeva LI, Rajjou LC, Hilhorst HWM, Bentsink LN (2019) NADP-MALIC ENZYME 1 Affects Germination after Seed Storage in Arabidopsis thaliana. Plant Cell Physiol 60(2):318-328. doi: 10.1093/pcp/pcy213. [Abstract]
  • Staiger D, Weber APM (2019) Molecular mechanisms of plant acclimation to changing environments. Plant Biol (Stuttg) 21 Suppl 1:3-5. [Abstract]
  • Bangash SAK, Müller-Schüssele SJ, Solbach D, Jansen M, Fiorani F, Schwarzländer M, Kopriva S, Meyer AJ (2019) Low-glutathione mutants are impaired in growth but do not show an increased sensitivity to moderate water deficit. PLOS ONE 14(10):e0220589. doi: 10.1371/journal.pone.0220589. [Abstract]

2018

  • Zhu L, Dama M, Pauly M (2018) Identification of an arabinopyranosyltransferase from Physcomitrella patens involved in the synthesis of the hemicellulose xyloglucan. Plant Direct 2(3):e00046. [Abstract]
  • Zheng Y, Wang S, Bonkowski M, Chen X, Griffiths B, Hu F, Liu M (2018) Litter chemistry influences earthworm effects on soil carbon loss and microbial carbon acquisition. Soil Biol Biochem 123:105-114. [Abstract]
  • Voiniciuc C, Dama M, Gawenda N, Stritt F, Pauly M (2019) Mechanistic insights from plant heteromannan synthesis in yeast. Proc Natl Acad Sci U S A 116(2):522-527. [Abstract]
  • Takou M, Wieters B, Kopriva S, Coupland G, Linstadter A, de Meaux J (2018) Linking genes with ecological strategies in Arabidopsis thaliana. J Exp Bot.doi: 10.1093/jxb/ery447 [Abstract]
  • Ramírez V, Xiong G, Mashiguchi K, Yamaguchi S, Pauly M (2018) Growth- and stress-related defects associated with wall hypoacetylation are strigolactone-dependent. Plant Direct 2(6):e00062. [Abstract]
  • Polko JK, Barnes WJ, Voiniciuc C, Doctor S, Steinwand B, Hill JL, Jr., Tien M, Pauly M, Anderson CT, Kieber JJ (2018) SHOU4 Proteins Regulate Trafficking of Cellulose Synthase Complexes to the Plasma Membrane. Curr Biol 28(19):3174-3182 e3176.[Abstract]
  • Kirschner S, Woodfield H, Prusko K, Koczor M, Gowik U, Hibberd JM, Westhoff P (2018) Expression of SULTR2;2, encoding a low-affinity sulphur transporter, in the Arabidopsis bundle sheath and vein cells is mediated by a positive regulator. J Exp Bot 69(20):4897-4906. [Abstract]
  • Jobe TO, Kopriva S (2018) Sulfur Metabolism in Plants. eLS).doi: doi:10.1002/9780470015902.a0020126.pub2[Abstract]
  • Henkes GJ, Kandeler E, Marhan S, Scheu S, Bonkowski M (2018) Interactions of Mycorrhiza and Protists in the Rhizosphere Systemically Alter Microbial Community Composition, Plant Shoot-to-Root Ratio and Within-Root System Nitrogen Allocation. Frontiers in Environmental Science 6(117). [Abstract]
  • Hage-Hülsmann J, Grünberger A, Thies S, Santiago-Schubel B, Klein AS, Pietruszka J, Binder D, Hilgers F, Domröse A, Drepper T, Kohlheyer D, Jaeger KE, Loeschcke A (2018) Natural biocide cocktails: Combinatorial antibiotic effects of prodigiosin and biosurfactants. PLoS One 13(7):e0200940. [Abstract]
  • Gerlich SC, Walker BJ, Krueger S, Kopriva S (2018) Sulfate Metabolism in C4 Flaveria Species Is Controlled by the Root and Connected to Serine Biosynthesis. Plant Physiol 178(2):565-582. [Abstract]
  • Dreyer I, Spitz O, Kanonenberg K, Montag K, Handrich M, Ahmad S, Schott-Verdugo S, Navarro-Retamal C, Rubio-Melendez ME, Gomez-Porras JL, Riedelsberger J, Molina-Montenegro MA, Succurro A, Zuccaro A, Gould SB, Bauer P, Schmitt L, Gohlke H (2018) Nutrient exchange in arbuscular mycorrhizal symbiosis from a thermodynamic point of view. New Phytol. doi: 10.1111/nph.15646 [Abstract]
  • Bhattacharya D, Qiu H, Lee J, Su Yoon H, Weber APM, Price DC (2018) When Less is More: Red Algae as Models for Studying Gene Loss and Genome Evolution in Eukaryotes. Crit Rev Plant Sci 37(1):81-99. [Abstract]
  • Ashykhmina N, Lorenz M, Frerigmann H, Koprivova A, Hofsetz E, Stuhrwohldt N, Flügge UI, Haferkamp I, Kopriva S, Gigolashvili T (2018) PAPST2 plays a critical role for PAP removal from the cytosol and subsequent degradation in plastids and mitochondria. Plant Cell:tpc.00512.02018. [Abstract]
  • Aghajanzadeh TA, Reich M, Kopriva S, De Kok LJ (2018) Impact of chloride (NaCl, KCl) and sulphate (Na2SO4, K2SO4) salinity on glucosinolate metabolism in Brassica rapa. Journal of Agronomy and Crop Science 204(2):137-146. [Abstract]
  • Olgeiser L, Haag C, Boerner S, Ule J, Busch A, Koepke J, König J, Feldbrügge M, Zarnack K. (2018) The key protein of endosomal mRNP transport Rrm4 binds translational landmark sites of cargo mRNAs. EMBO Rep. doi: 10.15252/embr.201846588. [Abstract]
  • Samuilov S, Brilhaus D, Rademacher N, Flachbart S, Arab L, Alfarraj S, Kuhnert F, Kopriva S, Weber APM, Mettler-Altmann T, Rennenberg H. (2018) The Photorespiratory BOU Gene Mutation Alters Sulfur Assimilation and Its Crosstalk With Carbon and Nitrogen Metabolism in Arabidopsis thaliana. Front Plant Sci. 9:1709. [Abstract]
  • Xie K, Guo L, Bai Y, Liu W, Yan J, Bucher M. (2018) Microbiomics and Plant Health: An Interdisciplinary and International Workshop on the PlantMicrobiome. Mol Plant. pii: S1674-2052(18)30340-X. [Abstract] 
  • Lazaro A, Zhou Y, Giesguth M, Nawaz K, Bergonzi S, Pecinka A, Coupland G, Albani MC.(2018) PERPETUAL FLOWERING2 coordinates the vernalization response and perennial flowering in Arabis alpina. J Exp Bot. doi: 10.1093/jxb/ery423. [Abstract]
  • Schmitz J, Rossoni AW, Maurino VG. (2018) Dissecting the Physiological Function of Plant Glyoxalase I and Glyoxalase I-Like Proteins. Front Plant Sci. 12;9:1618 [Abstract]
  • Döring F, Billakurthi K, Gowik U, Sultmanis S, Khoshravesh R, Das Gupta S, Sage TL, Westhoff P. (2018) Reporter-based forward genetic screen to identify bundle sheath anatomy mutants in A. thaliana. Plant J. doi: 10.1111/tpj.14165. [Abstract]
  • Béthune J, Jansen RP, Feldbrügge M, Zarnack K. (2018) Membrane-Associated RNA-Binding Proteins Orchestrate Organelle-Coupled Translation. Trends Cell Biol. pii: S0962-8924(18)30185-5. [Abstract]
  • Arias CL, Pavlovic T, Torcolese G, Badia MB, Gismondi M, Maurino VG, Andreo CS, Drincovich MF, Gerrard Wheeler MC, Saigo M. (2018) NADP-Dependent Malic Enzyme 1 Participates in the Abscisic Acid Response in Arabidopsis thaliana. Front Plant Sci. 9:1637. [Abstract]
  • Schmelling NM, Axmann IM. (2018) Computational modelling unravels the precise clockwork of cyanobacteria. Interface Focus. 8(6):20180038. [Abstract]
  • Bahramisharif A, Rose LE. (2018) Planta. Efficacy of biological agents and compost on growth and resistance of tomatoes to late blight. Planta. doi: 10.1007/s00425-018-3035-2. [Abstract]
  • Hilgers EJA, Staehr P, Flügge UI, Häusler RE. (2018) The Xylulose 5-Phosphate/Phosphate Translocator Supports Triose Phosphate, but Not Phosphoenolpyruvate Transport Across the Inner Envelope Membrane of Plastids in Arabidopsis thaliana Mutant Plants. Front Plant Sci. 9:1461. [Abstract]
  • Mulki MA, Bi X, von Korff M.(2018) FLOWERING LOCUS T3 controls spikelet initiation but not floral development.Plant Physiol. pii: pp.00236.2018. [Abstract]
  • Rossini L, Muehlbauer GJ, Okagaki R, Salvi S, von Korff M. (2018) Genetics of Whole Plant Morphology and Architecture. The Barley Genome pp 209-231 [Abstract]
  • Yazdanpanah F, Maurino VGMettler-Altmann T, Buijs G, Bailly M, Jashni MK, Willems L, Sergeeva LI, Rajjou L, Hilhorst HWM, Bentsink L. (2018) NADP-MALIC ENZYME 1 affects germination after seed storage in Arabidopsis thaliana. Plant Cell Physiol. doi: 10.1093/pcp/pcy213. [Abstract]
  • Durán P, Thiergart T, Garrido-Oter R, Agler M, Kemen E, Schulze-Lefert P, Hacquard S. (2018) Microbial Interkingdom Interactions in Roots Promote Arabidopsis Survival. Cell. 175(4):973-983.e14. [Abstract]
  • Levey M, Timm S, Mettler-Altmann T, Luca Borghi G, Koczor M, Arrivault S, Weber APM, Bauwe H, Gowik U, Westhoff P. (2018) Efficient 2-phosphoglycolate degradation is required to maintain carbon assimilation and allocation in the C4 plant Flaveria bidentis. J Exp Bot. doi: 10.1093/jxb/ery370. [Abstract]
  • Rishmawi L, Wolff H, Schrader A, Hülskamp M. (2018) Sub-epidermal Expression of ENHANCER OF TRIPTYCHON AND CAPRICE1 and Its Role in Root Hair Formation Upon Pi Starvation. Front Plant Sci. 27;9:1411. eCollection 2018. [Abstract]
  • Fabiańska I, Gerlach N, Almario J, Bucher M. (2018) Plant-mediated effects of soil phosphorus on the root-associated fungal microbiota in Arabidopsis thaliana. New Phytol. doi: 10.1111/nph.15538. [Abstract]
  • Baaske J, Gonschorek P, Engesser R, Dominguez-Monedero A, Raute K, Fischbach P, Müller K, Cachat E, Schamel WWA, Minguet S, Davies JA, Timmer J, Weber W, Zurbriggen MD. (2018) Dual-controlled optogenetic system for the rapid down-regulation of protein levels in mammalian cells. Sci Rep. 8(1):15024. [Abstract]
  • da Fonseca-Pereira P, Neri-Silva R, Cavalcanti JHF, Brito DS, Weber APM, Araújo WL, Nunes-Nesi A. (2018) Data-Mining Bioinformatics: Connecting Adenylate Transport and Metabolic Responses to Stress. Trends Plant Sci. 23(11):961-974. [Abstract]
  • Ben Abdallah H, Mai HJ, Slatni T, Fink-Straube C, Abdelly C, Bauer P. (2018) Natural Variation in Physiological Responses of Tunisian Hedysarum carnosum Under Iron Deficiency. Front Plant Sci. 9:1383. eCollection 2018. [Abstract]
  • Hilgers EJA, Schöttler MA, Mettler-Altmann T, Krueger S, Dörmann P, Eicks M, Flügge UI, Häusler RE. (2018) The Combined Loss of Triose Phosphate and Xylulose 5-Phosphate/Phosphate Translocators Leads to Severe Growth Retardation and Impaired Photosynthesis in Arabidopsis thaliana tpt/xpt Double Mutants. Front Plant Sci. 9:1331. eCollection 2018. [Abstract]
  • Aschenbroich J, Hussnaetter KP, Stoffels P, Langner T, Zander S, Sandrock B, Bölker M, Feldbrügge M, Schipper K. (2018) The germinal centre kinase Don3 is crucial for unconventional secretion of chitinase Cts1 in Ustilago maydis. Biochim Biophys Acta Proteins Proteom. pii: S1570-9639(18)30176-6. [Abstract]
  • Maekawa T, Kracher B, Saur IM, Maekawa Yoshikawa M, Kellner R, Pankin A, von Korff M, Schulze-Lefert P. (2018) Subfamily-specific specialization of RGH1/MLA immune receptors in wild barley. Mol Plant Microbe Interact. doi: 10.1094/MPMI-07-18-0186-FI. [Abstract]
  • de Vries S, de Vries J, von Dahlen JK, Gould SB, Archibald JM, Rose LE, Slamovits CH. (2018) On plant defense signaling networks and early land plant evolution. Commun Integr Biol. 11(3):1-14. [Abstract]
  • Valencia E, Gross N, Quero JL, Carmona CP, Ochoa V, Gozalo B, Delgado-Baquerizo M, Dumack K, Hamonts K, Singh BK, Bonkowski M, Maestre FT. (2018) Cascading effects from plants to soil microorganisms explain how plant species richness and simulated climate change affect soil multifunctionality. Glob Chang Biol. doi: 10.1111/gcb.14440. [Abstract]
  • Wibowo A, Becker C, Durr J, Price J, Spaepen S, Hilton S, Putra H, Papareddy R, Saintain Q, Harvey S, Bending GD, Schulze-Lefert P, Weigel D, Gutierrez-Marcos J. (2018) Partial maintenance of organ-specific epigenetic marks during plant asexual reproduction leads to heritable phenotypic variation. Proc Natl Acad Sci U S A. pii: 201805371 [Abstract] 
  • Xue L, Klinnawee L, Zhou Y, Saridis G, Vijayakumar V, Brands M, Dörmann P, Gigolashvili T, Turck F, Bucher M. (2018) AP2 transcription factor CBX1 with a specific function in symbiotic exchange of nutrients in mycorrhizal Lotus japonicus. Proc Natl Acad Sci U S A. pii: 201812275. [Abstract]
  • Cagnola JI, Cerdán PD, Pacín M, Andrade A, Rodriguez V, Zurbriggen MD, Legris M, Buchovsky S, Carrillo N, Chory J, Blázquez MA, Alabadi D, Casal JJ. (2018) Long-Day Photoperiod Enhances Jasmonic Acid-Related Plant Defense. Plant Physiol. 178(1):163-173. [Abstract]
  • Delporte M, Bernard G, Legrand G, Hielscher B, Lanoue A, Molinié R, Rambaud C, Mathiron D, Besseau S, Linka N, Hilbert JL, Gagneul D. (2018) A BAHD neofunctionalization promotes tetrahydroxycinnamoyl spermine accumulation in pollen coat of the Asteraceae family. J Exp Bot. doi: 10.1093/jxb/ery320. [Abstract]
  • Beyer HM, Thomas OS, Riegel N, Zurbriggen MD, Weber W, Hörner M. (2018) Generic and reversible opto-trapping of biomolecules. Acta Biomater. pii: S1742-7061(18)30499-9. [Abstract]
  • Pauly M, Ramírez V. (2018) New Insights Into Wall Polysaccharide O-Acetylation. Front Plant Sci. 9:1210. [Abstract]
  • Pfau T, Christian N, Masakapalli SK, Sweetlove LJ, Poolman MG, Ebenhöh O. (2018) The intertwined metabolism during symbiotic nitrogen fixation elucidated by metabolic modelling. Sci Rep. 8(1):12504. [Abstract]
  • Schlüter U, Bräutigam A, Droz JM, Schwender J, Weber AP. (2018) The role of alanine and aspartate aminotransferases in C4 photosynthesis. Plant Biol. doi: 10.1111/plb.12904. [Abstract]
  • Dittberner H, Korte A, Mettler-Altmann T, Weber APM, Monroe G, de Meaux J. (2018) Natural variation in stomata size contributes to the local adaptation of water-use efficiency in Arabidopsis thaliana. Mol Ecol. doi: 10.1111/mec.14838. [Abstract]
  • van der Schuren A, Voiniciuc C, Bragg J, Ljung K, Vogel J, Pauly M, Hardtke CS (2018) Broad spectrum developmental role of Brachypodium AUX1. New Phytol. 219(4):1216-1223. [Abstract]
  • Beddows I and Rose LE (2018) Factors determining hybridization rate in plants: A case study in Michigan. Perspect Plant Ecol Syst. 34:51-60 [Abstract]
  • Voiniciuc C, Pauly M, Usadel B (2018) Monitoring Polysaccharide Dynamics in the Plant Cell Wall. Plant Physiol. 2018 Apr;176(4):2590-2600. [Abstract]
  • Hartmann M, Zeier J (2018) L-Lys metabolism to N-hydroxypipecolic acid: an integral immune-activating pathway in plants. Plant J. doi: 10.1111/tpj.14037 [Abstract]
  • Terfrüchte M, Wewetzer S, Sarkari P, Stollewerk D, Franz-Wachtel M, Macek B, Schleputz T, Feldbrügge M, Buchs J, Schipper K (2018) Tackling destructive proteolysis of unconventionally secreted heterologous proteins in Ustilago maydis. J Biotechnol.doi: 10.1016/j.jbiotec.2018.07.035 [Abstract]
  • Rillig MC, Bonkowski M (2018) Microplastic and soil protists: A call for research. Environ Pollut 241:1128-1131. [Abstract]
  • Ökmen B, Mathow D, Hof A, Lahrmann U, Aßmann D, Doehlemann G (2018) Mining the effector repertoire of the biotrophic fungal pathogen Ustilago hordei during host and non-host infection. Mol Plant Pathol. doi: doi:10.1111/mpp.12732 [Abstract]
  • Bhatia C, Pandey A, Reddy Gaddam S, Hoecker U, Trivedi PK. (2018) Low Temperature Enhanced Flavonol Synthesis Requires Light-Associated Regulatory Components in Arabidopsis thaliana. Plant Cell Physiol. doi: 10.1093/pcp/pcy132 [Abstract]
  • Garrido-Oter R, Nakano RT, Dombrowski N, Ma KW; AgBiome Team, McHardy AC, Schulze-Lefert P. (2018) Modular Traits of the Rhizobiales Root Microbiota and Their Evolutionary Relationship with Symbiotic Rhizobia. Cell Host Microbe 24(1):155-167 e155. [Abstract]
  • Hüdig M, Schmitz J, Engqvist MKM, Maurino VG. (2018) Biochemical control systems for small molecule damage in plants. Plant Signal Behav. doi: 10.1080/15592324.2018.1477906 [Abstract] 
  • Ökmen B, Kemmerich B, Hilbig D, Wemhöner R, Aschenbroich J, Perrar A, Huesgen PF, Schipper K, Doehlemann G. (2018) Dual function of a secreted fungalysin metalloprotease in Ustilago maydis. New Phytol. doi: 10.1111/nph.15265 [Abstract] 
  • Pokhilko A, Ebenhöh O, Stark WM, Colloms SD. (2018) Mathematical model of a serine integrase-controlled toggle switch with a single input. J R Soc Interface. doi: 10.1093/gigascience/giy069 [Abstract] 
  • Meyer F, Hofmann P, Belmann P, Garrido-Oter R, Fritz A, Sczyrba A, McHardy AC. (2018) AMBER: Assessment of Metagenome BinnERs. Gigascience. doi: 10.1093/gigascience/giy069 [Abstract]
  • Chatelle C, Ochoa-Fernandez R, Engesser R, Schneider N, Beyer HM, Jones A, Timmer J, Zurbriggen MD*/Weber W* (2018) A green light-responsive system for the control of transgene expression in mammalian and plant cells, ACS Synth Biol 7(5):1349-1358.. *Corresponding authors [Abstract]
  • Abbas M, Hernandez-Garcia J, Pollmann S, Samodelov SL, Kolb M, Friml J, Hammes UZ, Zurbriggen MD, Blazquez MA, Alabadi D (2018) Auxin methylation is required for differential growth in Arabidopsis, Proceedings of the National Academy of Sciences (PNAS) USA doi: 10.1073/pnas.1806565115 [Abstract]
  • Middleton AM, Dal Bosco C, Chalp P, Nesch R, Harz H, Ren F, Bergamnn S, Wend S, Weber W, Hayaschi K-i, Zurbriggen MD, Uhl R, Ronneberger O, Palme K, Fleck C, Dovzhenko A (2018) Data-driven modelling of intracellular auxin fluxes indicates a dominant role of the ER in controlling nuclear auxin uptake. Cell reports doi: 10.1016/j.celrep.2018.02.074 [Abstract]
  • Denton AK, Mass J, Külahoglu C, Lercher MJ, Bräutigam A, Weber APM (2018) Corrigendum: Freeze-quenched maize mesophyll and bundle sheath separation uncovers bias in previous tissue-specific RNA-Seq data. J Exp Bot. doi: 10.1093/jxb/ery196 [Abstract]
  • Kopriva S, Chu C. (2018) Are we ready to improve phosphorus homeostasis in rice? J Exp Bot. doi: 10.1093/jxb/ery163. [Abstract]
  • Eisenhut M, Hoecker N, Schmidt SB, Basgaran RM, Flachbart S, Jahns P, Eser T, Geimer S, Husted S, Weber APM, Leister D, Schneider A (2018) The Plastid Envelope CHLOROPLAST MANGANESE TRANSPORTER1 Is Essential for Manganese Homeostasis in Arabidopsis. Mol Plant. pii: S1674-2052(18)30158-8. doi: 10.1016/j.molp.2018.04.008. [Abstract]
  • Magni S, Succurro A, Skupin A, Ebenhöh O (2018) Data-driven dynamical model indicates that the heat shock response in Chlamydomonas reinhardtii is tailored to handle natural temperature variation. Soc Interface. pii: 20170965. doi: 10.1098/rsif.2017.0965. [Abstract]
  • Pfeifer B, Lercher MJ (2018) BlockFeST: Bayesian calculation of region-specific FST to detect local adaptation. Bioinformatics. doi: 10.1093/bioinformatics/bty299 [Abstract]
  • Lee J, Yang EC, Graf L, Yang JH, Qiu H, Zel Zion U, Chan CX, Stephens TG, Weber APM, Boo GH, Boo SM, Kim KM, Shin Y, Jung M, Lee SJ, Yim HS, Lee JH, Bhattacharya D, Yoon HS (2018) Analysis of the draft genome of the red seaweed Gracilariopsis chorda provides insights into genome size evolution in Rhodophyta. Mol Biol Evol. doi: 10.1093/molbev/msy081 [Abstract]
  • Kotz S, Kullmann M, Kalayda GV, Dyballa-Rukes N, Jaehde U, Metzger S (2018) Optimized two-dimensional gel electrophoresis in an alkaline pH range improves the identification of intracellular CFDA-cisplatin-protein adducts in ovarian cancer cells. Electrophoresis. doi: 10.1002/elps.201700377 [Abstract]
  • Kirschner GK, Stahl Y, Imani J, von Korff M, Simon R (2018) Fluorescent reporter lines for auxin and cytokinin signalling in barley (Hordeum vulgare). PLoS One 13(4):e0196086. [Abstract]
  • Hahn F, Eisenhut M, Mantegazza O, Weber APM (2018) Homology-Directed Repair of a Defective Glabrous Gene in Arabidopsis With Cas9-Based Gene Targeting. Front Plant Sci 9:424. [Abstract]
  • Brands M, Wewer V, Keymer A, Gutjahr C, Dörmann P (2018) The Lotus japonicus acyl-acyl carrier protein thioesterase FatM is required for mycorrhiza formation and lipid accumulation of Rhizophagus irregularis. Plant J. doi: 10.1111/tpj.13943 [Abstract]
  • Beyer HM, Engesser R, Horner M, Koschmieder J, Beyer P, Timmer J, Zurbriggen MD, Weber W (2018) Synthetic Biology Makes Polymer Materials Count. Adv Mater:e1800472. [Abstract]
  • Fiore-Donno AM, Rixen C, Rippin M, Glaser K, Samolov E, Karsten U, Becker B, Bonkowski M (2018) New barcoded primers for efficient retrieval of cercozoan sequences in high-throughput environmental diversity surveys, with emphasis on worldwide biological soil crusts. Mol Ecol Resour 18(2):229-239. [Abstract]
  • Gruner K, Zeier T, Aretz C, Zeier J (2018) A critical role for Arabidopsis MILDEW RESISTANCE LOCUS O2 in systemic acquired resistance. Plant J. [Abstract]
  • Qiu H, Rossoni AW, Weber APM, Yoon HS, Bhattacharya D (2018) Unexpected conservation of the RNA splicing apparatus in the highly streamlined genome of Galdieria sulphuraria. BMC Evol Biol 18(1):41. [Abstract]
  • Riquelme M, Aguirre J, Bartnicki-Garcia S, Braus GH, Feldbrugge M, Fleig U, Hansberg W, Herrera-Estrella A, Kamper J, Kuck U, Mourino-Perez RR, Takeshita N, Fischer R (2018) Fungal Morphogenesis, from the Polarized Growth of Hyphae to Complex Reproduction and Infection Structures. Microbiol Mol Biol Rev 82(2). [Abstract]
  • Senoussi A, Lee Tin Wah J, Shimizu Y, Robert J, Jaramillo A, Findeiss S, Axmann IM, Estevez-Torres A (2018) Quantitative Characterization of Translational Riboregulators Using an in Vitro Transcription-Translation System. ACS Synth Biol. [Abstract]
  • Singh D, Nedbal L, Ebenhoh O (2018) Modelling phosphorus uptake in microalgae. Biochem Soc Trans 46(2):483-490. [Abstract]
  • Voiniciuc C, Pauly M, Usadel B (2018) Monitoring Polysaccharide Dynamics in the Plant Cell Wall. Plant Physiol 176(4):2590-2600. [Abstract]
  • Hartmann M, Zeier J, Bernsdorff F, Reichel-Deland V, Kim D, Hohmann M, Scholten N, Schuck S, Bräutigam A, Holzel T, Ganter C, Zeier J (2018) Flavin Monooxygenase-Generated N-Hydroxypipecolic Acid Is a Critical Element of Plant Systemic Immunity. Cell. [Abstract]
  • Lazaro A, Obeng-Hinneh E, Albani MC (2018) Extended vernalization regulates inflorescence fate in Arabis alpina by stably silencing PERPETUAL FLOWERING 1. Plant Physiol. [Abstract]
  • Monné M, Daddabbo L, Gagneul D, Obata T, Hielscher B, Palmieri L, Miniero DV, Fernie AR, Weber AP, Palmieri F (2018) Uncoupling proteins 1 and 2 (UCP1 and UCP2) from Arabidopsis thaliana are mitochondrial transporters of aspartate, glutamate, and dicarboxylates. Journal of Biological Chemistry 293(11):4213-4227. [Abstract]
  • Niessing D, Jansen RP, Pohlmann T, Feldbrügge M (2018) mRNA transport in fungal top models. Wiley Interdisciplinary Reviews: RNA 9(1):e1453. [Abstract]
  • Schreiber C, Schiedung H, Harrison L, Briese C, Ackermann B, Kant J, Schrey SD, Hofmann D, Singh D, Ebenhöh O, Amelung W, Schurr U, Mettler-Altmann T, Huber G, Jablonowski ND, Nedbal L (2018) Evaluating potential of green alga Chlorella vulgaris to accumulate phosphorus and to fertilize nutrient-poor soil substrates for crop plants. J Appl Phycol. [Abstract]
  • Stich B, Van Inghelandt D (2018) Prospects and Potential Uses of Genomic Prediction of Key Performance Traits in Tetraploid Potato. Front Plant Sci 9:159. [Abstract]
  • Slattery RA, Walker BJ, Weber APM, Ort DR (2017) The impacts of fluctuating light on crop performance. Plant Physiol. doi: 10.1104/pp.17.01234 [Abstract]
  • Ziemann S, van der Linde K, Lahrmann U, Acar B, Kaschani F, Colby T, Kaiser M, Ding Y, Schmelz E, Huffaker A, Holton N, Zipfel C, Doehlemann G (2018) An apoplastic peptide activates salicylic acid signalling in maize. Nat Plants 4(3):172-180. [Abstract]
  • Zhou L, Obhof T, Schneider K, Feldbrügge M, Nienhaus GU, Kamper J (2018) Cytoplasmic Transport Machinery of the SPF27 Homologue Num1 in Ustilago maydis. Sci Rep 8(1):3611. [Abstract]
  • Succurro A, Ebenhöh O (2018) Review and perspective on mathematical modeling of microbial ecosystems. Biochem Soc Trans. doi: 10.1042/BST20170265 [Abstract]
  • Pankin A, Altmüller J, Becker C, von Korff M (2018) Targeted resequencing reveals genomic signatures of barley domestication. New Phytol. doi: 10.1111/nph.15077 [Abstract]
  • Nowack ECM, Weber APM (2018) Genomics-Informed Insights into Endosymbiotic Organelle Evolution in Photosynthetic Eukaryotes. Annu Rev Plant Biol. doi: 10.1146/annurev-arplant-042817-040209 [Abstract]
  • Müller GL, Lara MV, Oitaven P, Andreo CS, Maurino VG, Drincovich MF (2018) Improved water use efficiency and shorter life cycle of Nicotiana tabacum due to modification of guard and vascular companion cells. Sci Rep 8(1):4380. [Abstract]
  • de Vries S, von Dahlen JK, Schnake A, Ginschel S, Schulz B, Rose LE (2018) Broad-spectrum inhibition of Phytophthora infestans by fungal endophytes. FEMS Microbiol Ecol. doi: 10.1093/femsec/fiy037 [Abstract]
  • de Vries S, Kukuk A, von Dahlen JK, Schnake A, Kloesges T, Rose LE (2018) Expression profiling across wild and cultivated tomatoes supports the relevance of early miR482/2118 suppression for Phytophthora resistance. Proc Biol Sci 285(1873). [Abstract]
  • Blum CF, Heramvand N, Khonsari AS, Kollmann M (2018) Experimental noise cutoff boosts inferability of transcriptional networks in large-scale gene-deletion studies. Nat Commun 9(1):133. [Abstract]
  • Van Der Linde K, Timofejeva L, Egger RL, Ilau B, Hammond R, Teng C, Meyers BC, Doehlemann G, Walbot V (2018) Pathogen Trojan horse delivers bioactive host protein to alter maize (Zea mays) anther cell behavior in situ. Plant Cell. doi: 10.1105/tpc.17.00238 [Abstract]
  • Racca S, Welchen E, Gras DE, Tarkowska D, Tureckova V, Maurino VG, Gonzalez DH (2018) Interplay between cytochrome c and gibberellins during Arabidopsis vegetative development. Plant J. doi: 10.1111/tpj.13845 [Abstract]
  • Ordonez-Herrera N, Trimborn L, Menje M, Henschel M, Robers L, Kaufholdt D, Hansch R, Adrian J, Ponnu J, Hoecker U (2018) The Transcription Factor COL12 Is a Substrate of the COP1/SPA E3 Ligase and Regulates Flowering Time and Plant Architecture. Plant Physiol 176(2):1327-1340. [Abstract]
  • Milcu A, Puga-Freitas R, Ellison AM, Blouin M, Scheu S, Freschet GT, Rose L, Barot S, Cesarz S, Eisenhauer N, Girin T, Assandri D, Bonkowski M, Buchmann N, Butenschoen O, Devidal S, Gleixner G, Gessler A, Gigon A, Greiner A, Grignani C, Hansart A, Kayler Z, Lange M, Lata JC, Le Galliard JF, Lukac M, Mannerheim N, Muller MEH, Pando A, Rotter P, Scherer-Lorenzen M, Seyhun R, Urban-Mead K, Weigelt A, Zavattaro L, Roy J (2018) Genotypic variability enhances the reproducibility of an ecological study. Nat Ecol Evol 2(2):279-287. [Abstract]
  • Kranz-Finger S, Mahmoud O, Ricklefs E, Ditz N, Bakkes PJ, Urlacher VB (2018) Insights into the functional properties of the marneral oxidase CYP71A16 from Arabidopsis thaliana. Biochim Biophys Acta 1866(1):2-10. [Abstract]
  • Jacoby RP, Martyn A, Kopriva S (2018) Exometabolomic profiling of bacterial strains cultivated using Arabidopsis root extract as the sole carbon source. Mol Plant Microbe Interact. doi: 10.1094/MPMI-10-17-0253-R [Abstract]
  • Geisen S, Mitchell EAD, Adl S, Bonkowski M, Dunthorn M, Ekelund F, Fernandez LD, Jousset A, Krashevska V, Singer D, Spiegel FW, Walochnik J, Lara E (2018) Soil protists: a fertile frontier in soil biology research. FEMS Microbiol Rev. doi: 10.1093/femsre/fuy006 [Abstract]
  • Flues S, Blokker M, Dumack K, Bonkowski M (2018) Diversity of Cercomonad Species in the Phyllosphere and Rhizosphere of Different Plant Species with a Description of Neocercomonas epiphylla (Cercozoa, Rhizaria) a Leaf-Associated Protist. J Eukaryot Microbiol.doi: 10.1111/jeu.12503 [Abstract]
  • Matei A, Ernst C, Gunl M, Thiele B, Altmüller J, Walbot V, Usadel B, Doehlemann G (2018) How to make a tumour: cell type specific dissection of Ustilago maydis-induced tumour development in maize leaves. New Phytol. doi: 10.1111/nph.14960 [Abstract]
  • Gao NL, Zhang C, Zhang Z, Hu S, Lercher MJ, Zhao XM, Bork P, Liu Z, Chen WH (2018) MVP: a microbe-phage interaction database. Nucleic Acids Res 46(D1):D700-D707. [Abstract]
  • Pislewska-Bednarek M, Nakano RT, Hiruma K, Pastorczyk M, Sanchez-Vallet A, Singkaravanit-Ogawa S, Ciesiolka D, Takano Y, Molina A, Schulze-Lefert P, Bednarek P (2018) Glutathione Transferase U13 Functions in Pathogen-Triggered Glucosinolate Metabolism. Plant Physiol 176(1):538-551. [Abstract]
  • Ebenhöh O, Spelberg S (2018) The importance of the photosynthetic Gibbs effect in the elucidation of the Calvin-Benson-Bassham cycle. Biochem Soc Trans. doi: 10.1042/BST20170245 [Abstract]
  • Schuler ML, Sedelnikova OV, Walker BJ, Westhoff P, Langdale JA (2018) SHORTROOT-Mediated Increase in Stomatal Density Has No Impact on Photosynthetic Efficiency. Plant Physiol 176(1):757-772. [Abstract]
  • Zander S, Muntjes K, Feldbrügge M (2018) RNA Live Imaging in the Model Microorganism Ustilago maydis. Methods Mol Biol 1649:319-335. [Abstract]
  • Schwacke R, Flügge UI (2018) Identification and Characterization of Plant Membrane Proteins Using ARAMEMNON. Methods Mol Biol 1696:249-259. [Abstract]
  • de Vries S, de Vries J, Teschke H, von Dahlen JK, Rose LE, Gould SB (2018) Jasmonic and salicylic acid response in the fern Azolla filiculoides and its cyanobiont. Plant Cell Environ.doi: 10.1111/pce.13131 [Abstract]
  • Wammers M, Schupp AK, Bode JG, Ehlting C, Wolf S, Deenen R, Köhrer K, Häussinger D, Graf D (2018) Reprogramming of pro-inflammatory human macrophages to an anti-inflammatory phenotype by bile acids. Sci Rep 8(1):255. [Abstract]

To top

2017

  • Brandenburg F, Schoffman H, Kurz S, Krämer U, Keren N, Weber AP, Eisenhut M (2017) The Synechocystis Manganese Exporter Mnx Is Essential for Manganese Homeostasis in Cyanobacteria. Plant Physiol 173(3):1798-1810. [Abstract]
  • Gowik U, Schulze S, Saladie M, Rolland V, Tanz SK, Westhoff P, Ludwig M (2017) A MEM1-like motif directs mesophyll cell-specific expression of the gene encoding the C4 carbonic anhydrase in Flaveria. J Exp Bot 68(2):311-320. [Abstract]
  • Hahn F, Eisenhut M, Mantegazza O, Weber AP (2017) Generation of Targeted Knockout Mutants in Arabidopsis thaliana Using CRISPR/Cas9. Bio-protocol 7(13):e2384. [Abstract]
  • Hahn F, Mantegazza O, Greiner A, Hegemann P, Eisenhut M, Weber AP (2017) An Efficient Visual Screen for CRISPR/Cas9 Activity in Arabidopsis thaliana. Frontiers in Plant Science 8(39). [Abstract]
  • Moejes F, Succurro A, Popa O, Maguire J, Ebenhöh O (2017) Dynamics of the Bacterial Community Associated with Phaeodactylum tricornutum Cultures. Processes 5(4):77. [Abstract]
  • Moller SR, Yi X, Velasquez SM, Gille S, Hansen PL, Poulsen CP, Olsen CE, Rejzek M, Parsons H, Yang Z, Wandall HH, Clausen H, Field RA, Pauly M, Estevez JM, Harholt J, Ulvskov P, Petersen BL (2017) Identification and evolution of a plant cell wall specific glycoprotein glycosyl transferase, ExAD. Sci Rep 7:45341. [Abstract]
  • Robbins C, Thiergart T, Hacquard S, Garrido-Oter R, Gans W, Peiter E, Schulze-Lefert P, Spaepen S (2017) Root-Associated Bacterial and Fungal Community Profiles of Arabidopsis thaliana Are Robust Across Contrasting Soil P Levels. Phytobiomes:PBIOMES-09-17-0042-R. [Abstract]
  • Truse R, Hinterberg J, Schulz J, Herminghaus A, Weber A, Mettler-Altmann T, Bauer I, Picker O, Vollmer C (2017) Effect of Topical Iloprost and Nitroglycerin on Gastric Microcirculation and Barrier Function during Hemorrhagic Shock in Dogs. Journal of Vascular Research 54(2):109-121. [Abstract]
  • Mateos JL, Tilmes V, Madrigal P, Severing E, Richter R, Rijkenberg CWM, Krajewski P, Coupland G (2017) Divergence of regulatory networks governed by the orthologous transcription factors FLC and PEP1 in Brassicaceae species. Proc Natl Acad Sci U S A. 114(51):E11037-E11046. doi: 10.1073/pnas.1618075114 [Abstract]
  • Schmitz J, Dittmar IC, Brockmann JD, Schmidt M, Hüdig M, Rossoni AW, Maurino VG (2017) Defense against Reactive Carbonyl Species Involves at Least Three Subcellular Compartments Where Individual Components of the System Respond to Cellular Sugar Status. Plant Cell 29(12):3234-3254. [Abstract]
  • Loeschcke A, Dienst D, Wewer V, Hage-Hülsmann J, Dietsch M, Kranz-Finger S, Hüren V, Metzger S, Urlacher VB, Gigolashvili T, Kopriva S, Axmann IM, Drepper T, Jaeger KE (2017) The photosynthetic bacteria Rhodobacter capsulatus and Synechocystis sp. PCC 6803 as new hosts for cyclic plant triterpene biosynthesis. PLoS One 12(12):e0189816. [Abstract]
  • Lauterbach M, Schmidt H, Billakurthi K, Hankeln T, Westhoff P, Gowik U, Kadereit G (2017) De novo Transcriptome Assembly and Comparison of C3, C3-C4, and C4 Species of Tribe Salsoleae (Chenopodiaceae). Front Plant Sci 8:1939. [Abstract]
  • Heilmann B, Hakkila K, Georg J, Tyystjarvi T, Hess WR, Axmann IM, Dienst D (2017) 6S RNA plays a role in recovery from nitrogen depletion in Synechocystis sp. PCC 6803. BMC Microbiol 17(1):229. [Abstract]
  • Fiore-Donno AM, Rixen C, Rippin M, Glaser K, Samolov E, Karsten U, Becker B, Bonkowski M (2017) New barcoded primers for efficient retrieval of cercozoan sequences in high-throughput environmental diversity surveys, with emphasis on worldwide biological soil crusts. Mol Ecol Resour, doi: 10.1111/1755-0998.12729. [Abstract]
  • Brambilla V, Martignago D, Goretti D, Cerise M, Somssich M, de Rosa M, Galbiati F, Shrestha R, Lazzaro F, Simon R, Fornara F (2017) Antagonistic Transcription Factor Complexes Modulate the Floral Transition in Rice. The Plant Cell 29(11):2801-2816. [Abstract]
  • Ye Z, Pan Y, Zhang Y, Cui H, Jin G, McHardy AC, Fan L, Yu X (2017) Comparative whole-genome analysis reveals artificial selection effects on Ustilago esculenta genome. DNA Res. [Abstract]
  • Stoffels C, Oumari M, Perrou A, Termath A, Schlundt W, Schmalz HG, Schafer M, Wewer V, Metzger S, Schomig E, Grundemann D (2017) Ergothioneine stands out from hercynine in the reaction with singlet oxygen: Resistance to glutathione and TRIS in the generation of specific products indicates high reactivity. Free Radic Biol Med 113:385-394. [Abstract]
  • Sczyrba A, Hofmann P, Belmann P, Koslicki D, Janssen S, Droge J, Gregor I, Majda S, Fiedler J, Dahms E, Bremges A, Fritz A, Garrido-Oter R, Jorgensen TS, Shapiro N, Blood PD, Gurevich A, Bai Y, Turaev D, DeMaere MZ, Chikhi R, Nagarajan N, Quince C, Meyer F, Balvociute M, Hansen LH, Sorensen SJ, Chia BKH, Denis B, Froula JL, Wang Z, Egan R, Don Kang D, Cook JJ, Deltel C, Beckstette M, Lemaitre C, Peterlongo P, Rizk G, Lavenier D, Wu YW, Singer SW, Jain C, Strous M, Klingenberg H, Meinicke P, Barton MD, Lingner T, Lin HH, Liao YC, Silva GGZ, Cuevas DA, Edwards RA, Saha S, Piro VC, Renard BY, Pop M, Klenk HP, Goker M, Kyrpides NC, Woyke T, Vorholt JA, Schulze-Lefert P, Rubin EM, Darling AE, Rattei T, McHardy AC (2017) Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software. Nat Methods 14(11):1063-1071. [Abstract]
  • Moudrikova S, Sadowsky A, Metzger S, Nedbal L, Mettler-Altmann T, Mojzes P (2017) Quantification of Polyphosphate in Microalgae by Raman Microscopy and by a Reference Enzymatic Assay. Anal Chem. [Abstract]
  • König S, Eisenhut M, Bräutigam A, Kurz S, Weber APM, Buchel C (2017) The Influence of a Cryptochrome on the Gene Expression Profile in the Diatom Phaeodactylum tricornutum under Blue Light and in Darkness. Plant Cell Physiol 58(11):1914-1923. [Abstract]
  • Fischer K, Weber APM (2017) Sometimes a rocker-switch motion. Nat Plants 3(10):771-772. [Abstract]
  • Dijkhuizen LW, Brouwer P, Bolhuis H, Reichart GJ, Koppers N, Huettel B, Bolger AM, Li FW, Cheng S, Liu X, Wong GK, Pryer K, Weber A, Bräutigam A, Schluepmann H (2017) Is there foul play in the leaf pocket? The metagenome of floating fern Azolla reveals endophytes that do not fix N2 but may denitrify. New Phytol. [Abstract]
  • Beddows I, Reddy A, Kloesges T, Rose LE (2017) Population genomics in wild tomatoes - the interplay of divergence and admixture. Genome Biol Evol. [Abstract]
  • Almario J, Jeena G, Wunder J, Langen G, Zuccaro A, Coupland G, Bucher M (2017) Root-associated fungal microbiota of nonmycorrhizal Arabis alpina and its contribution to plant phosphorus nutrition. Proc Natl Acad Sci U S A. doi: 10.1073/pnas.1710455114 [Abstract]
  • Sapp M, Ploch S, Fiore-Donno AM, Bonkowski M, Rose LE (2017) Protists are an integral part of the Arabidopsis thaliana microbiome. Environ Microbiol. doi: 10.1111/1462-2920.13941 [Abstract]
  • Holtkotte X, Ponnu J, Ahmad M, Hoecker U (2017) The blue light-induced interaction of cryptochrome 1 with COP1 requires SPA proteins during Arabidopsis light signaling. PLoS Genet 13(10):e1007044. [Abstract]
  • Jacoby R, Peukert M, Succurro A, Koprivova A, Kopriva S (2017) The Role of Soil Microorganisms in Plant Mineral Nutrition-Current Knowledge and Future Directions. Front Plant Sci 8:1617. [Abstract]
  • Kranz-Finger S, Mahmoud O, Ricklefs E, Ditz N, Bakkes PJ, Urlacher VB (2017) Insights into the functional properties of the marneral oxidase CYP71A16 from Arabidopsis thaliana. Biochim Biophys Acta. doi: 10.1016/j.bbapap.2017.07.008  [Abstract]
  • Gao N, Lu G, Lercher MJ, Chen WH (2017) Selection for energy efficiency drives strand-biased gene distribution in prokaryotes. Sci Rep 7(1):10572. [Abstract]
  • Naranjo-Arcos MA, Maurer F, Meiser J, Pateyron S, Fink-Straube C, Bauer P (2017) Dissection of iron signaling and iron accumulation by overexpression of subgroup Ib bHLH039 protein. Sci Rep 7(1):10911. [Abstract]
  • Kellner R, Göhre V (2017) Thecaphora thlaspeos–ein Brandpilz spezialisiert auf Modellpflanzen. BIOspektrum 23(5):498-500. [Abstract]
  • Pierella Karlusich JJ, Zurbriggen MD, Shahinnia F, Sonnewald S, Sonnewald U, Hosseini SA, Hajirezaei MR, Carrillo N (2017) Chloroplast Redox Status Modulates Genome-Wide Plant Responses during the Non-host Interaction of Tobacco with the Hemibiotrophic Bacterium Xanthomonas campestris pv. vesicatoria. Front Plant Sci 8:1158. [Abstract]
  • Samodelov SL, Zurbriggen MD (2017) Quantitatively Understanding Plant Signaling: Novel Theoretical-Experimental Approaches. Trends Plant Sci 22(8):685-704. [Abstract]
  • Machné R, Murray DB, Stadler PF (2017) Similarity-Based Segmentation of Multi-Dimensional Signals. Scientific Reports 7(1):12355. [Abstract]
  • Iglesias MJ, Sellaro R, Zurbriggen MD, Casal JJ (2017) Multiple links between shade avoidance and auxin networks. J Exp Bot. doi: 10.1093/jxb/erx295
  • Winkler M, Niemeyer M, Hellmuth A, Janitza P, Christ G, Samodelov SL, Wilde V, Majovsky P, Trujillo M, Zurbriggen MD, Hoehenwarter W, Quint M, Calderon Villalobos LIA (2017) Variation in auxin sensing guides AUX/IAA transcriptional repressor ubiquitylation and destruction. Nat Commun 8:15706. [Abstract]
  • Kruse J, Doehlemann G, Kemen E, Thines M (2017) Asexual and sexual morphs of Moesziomyces revisited. IMA Fungus. Jun;8(1):117-129. doi: 10.5598/imafungus.2017.08.01.09. [Abstract]
  • Engqvist MKM, Maurino VG (2017) Metabolic Engineering of Photorespiration. Methods Mol Biol. 1653:137-155. doi: 10.1007/978-1-4939-7225-8_10. [Abstract]
  • Roell MS, Kuhnert F, Zamani-Nour S, Weber APM (2017) In Vitro Analysis of Metabolite Transport Proteins. Methods Mol Biol. 1653:83-96. doi: 10.1007/978-1-4939-7225-8_6. [Abstract]
  • Kirschner GK, Stahl Y, Von Korff M, Simon R (2017) Unique and Conserved Features of the Barley Root Meristem. Front Plant Sci. 21;8:1240. doi: 10.3389/fpls.2017.01240. [Abstract]
  • Long Y, Stahl Y, Weidtkamp-Peters S, Postma M, Zhou W, Goedhart J, Sanchez-Perez MI, Gadella TWJ, Simon R, Scheres B, Blilou I (2017) In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots. Nature. doi: 10.1038/nature23317 [Abstract]
  • Minges A, Groth G (2017) Small-molecule inhibition of pyruvate phosphate dikinase targeting the nucleotide binding site. PLoS One 12(7):e0181139. [Abstract]
  • Moejes FW, Matuszyńska A, Adhikari K, Bassi R, Cariti F, Cogne G, Dikaios I, Falciatore A, Finazzi G, Flori S, Goldschmidt-Clermont M, Magni S, Maguire J, Le Monnier A, Müller K, Poolman M, Singh D, Spelberg S, Stella GR, Succurro A, Taddei L, Urbain B, Villanova V, Zabke C, Ebenhöh O (2017) A systems-wide understanding of photosynthetic acclimation in algae and higher plants. J Exp Bot 68(11):2667-2681. [Abstract]
  • Rademacher N, Wrobel TJ, Rossoni AW, Kurz S, Bräutigam A, Weber APM, Eisenhut M (2017) Transcriptional response of the extremophile red alga Cyanidioschyzon merolae to changes in CO2 concentrations. J Plant Physiol. doi: 10.1016/j.jplph.2017.06.014 [Abstract]
  • Schmelling NM, Lehmann R, Chaudhury P, Beck C, Albers SV, Axmann IM, Wiegard A (2017) Minimal tool set for a prokaryotic circadian clock. BMC Evol Biol 17(1):169. [Abstract]
  • van Esse GW, Walla A, Finke A, Koornneef M, Pecinka A, von Korff M (2017) Six-rowed spike 3 (VRS3) is a histone demethylase that controls lateral spikelet development in barley. Plant Physiol. doi: 10.1104/pp.17.00108 [Abstract]
  • Redkar A, Matei A, Doehlemann G (2017) Insights into Host Cell Modulation and Induction of New Cells by the Corn Smut Ustilago maydis. Front Plant Sci 8:899. [Abstract]
  • Raguin A, Ebenhöh O (2017) Design starch: stochastic modeling of starch granule biogenesis. Biochem Soc Trans. doi: 10.1042/BST20160407 [Abstract]
  • Münch PC, Stecher B, McHardy AC (2017) EDEN: Evolutionary Dynamics within Environments. Bioinformatics. doi: 10.1093/bioinformatics/btx394 [Abstract]
  • Hacquard S, Spaepen S, Garrido-Oter R, Schulze-Lefert P (2017) Interplay Between Innate Immunity and the Plant Microbiota. Annu Rev Phytopathol. doi: 10.1146/annurev-phyto-080516-035623
  • Dumack K, Flues S, Hermanns K, Bonkowski M (2017) Rhogostomidae (Cercozoa) from soils, roots and plant leaves (Arabidopsis thaliana): Description of Rhogostoma epiphylla sp. nov. and R. cylindrica sp. nov. Eur J Protistol 60:76-86. [Abstract]
  • Balcerowicz M, Kerner K, Schenkel C, Hoecker U (2017) SPA Proteins Affect the Subcellular Localization of COP1 in the COP1/SPA Ubiquitin Ligase Complex during Photomorphogenesis. Plant Physiol 174(3):1314-1321. [Abstract]
  • Wawra S, Trusch F, Matena A, Apostolakis K, Linne U, Zhukov I, Stanek J, Kozminski W, Davidson I, Secombes CJ, Bayer P, van West P (2017) The RxLR Motif of the Host Targeting Effector AVR3a of Phytophthora infestans Is Cleaved before Secretion. Plant Cell 29(6):1184-1195. [Abstract]
  • Terfrüchte M, Reindl M, Jankowski S, Sarkari P, Feldbrügge M, Schipper K (2017) Applying Unconventional Secretion in Ustilago maydis for the Export of Functional Nanobodies. Int J Mol Sci 18(5). [Abstract]
  • Succurro A, Moejes FW, Ebenhöh O (2017) A diverse community to study communities: integration of experiments and mathematical models to study microbial consortia. J Bacteriol. doi: 10.1128/JB.00865-16 [Abstract]
  • Gol L, Tomé F, von Korff M (2017) Floral transitions in wheat and barley: interactions between photoperiod, abiotic stresses, and nutrient status. J Exp Bot. doi: 10.1093/jxb/erx055 [Abstract]
  • Hartmann M, Kim D, Bernsdorff F, Ajami-Rashidi Z, Scholten N, Schreiber S, Zeier T, Schuck S, Reichel-Deland V, Zeier J (2017) Biochemical Principles and Functional Aspects of Pipecolic Acid Biosynthesis in Plant Immunity. Plant Physiol 174(1):124-153. [Abstract]
  • Rast-Somssich MI, Zadnikova P, Schmid S, Kieffer M, Kepinski S, Simon R (2017) The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J Exp Bot. doi: 10.1093/jxb/erx131 [Abstract]
  • Minges A, Höppner A, Groth G (2017) Trapped Intermediate State of Plant Pyruvate Phosphate Dikinase Indicates Sub-steps in Catalytic Swiveling Domain Mechanism. Protein Sci. doi:10.1002/pro.3184 [Abstract]
  • Heckmann D, Schlüter U, Weber APM (2017) Machine learning techniques for predicting crop photosynthetic capacity from leaf reflectance spectra. Mol Plant. doi: 10.1016/j.molp.2017.04.009 [Abstract]
  • Somssich M, Simon R (2017) Studying Protein-Protein Interactions In Planta Using Advanced Fluorescence Microscopy. Methods Mol Biol 1610:267-285. [Abstract]
  • Hoecker U (2017) The activities of the E3 ubiquitin ligase COP1/SPA, a key repressor in light signaling. Curr Opin Plant Biol 37:63-69. [Abstract]
  • Tomé F, Jansseune K, Saey B, Grundy J, Vandenbroucke K, Hannah MA, Redestig H (2017) rosettR: protocol and software for seedling area and growth analysis. Plant Methods 13(1):13. [Abstract]
  • Minges A, Ciupka D, Winkler C, Hoppner A, Gohlke H, Groth G (2017) Structural intermediates and directionality of the swiveling motion of Pyruvate Phosphate Dikinase. Sci Rep 7:45389. [Abstract]
  • Hielscher B, Charton L, Mettler-Altmann T, Linka N (2017) Analysis of Peroxisomal beta-Oxidation During Storage Oil Mobilization in Arabidopsis thaliana Seedlings. Methods Mol Biol 1595:291-304. [Abstract]
  • Haag C, Pohlmann T, Feldbrügge M (2017) The ESCRT regulator Did2 maintains the balance between long-distance endosomal transport and endocytic trafficking. PLoS Genet 13(4):e1006734. [Abstract]
  • de Vries J, de Vries S, Slamovits CH, Rose LE, Archibald JM (2017) How Embryophytic is the Biosynthesis of Phenylpropanoids and their Derivatives in Streptophyte Algae? Plant Cell Physiol. doi: 10.1093/pcp/pcx037 [Abstract]
  • Cardenas-Monroy CA, Pohlmann T, Pinon-Zarate G, Matus-Ortega G, Guerra G, Feldbrügge M, Pardo JP (2017) The mitochondrial alternative oxidase Aox1 is needed to cope with respiratory stress but dispensable for pathogenic development in Ustilago maydis. PLoS One 12(3):e0173389. [Abstract]
  • Brouwer P, Bräutigam A, Buijs VA, Tazelaar AO, van der Werf A, Schlüter U, Reichart GJ, Bolger A, Usadel B, Weber AP, Schluepmann H (2017) Metabolic Adaptation, a Specialized Leaf Organ Structure and Vascular Responses to Diurnal N2 Fixation by Nostoc azollae Sustain the Astonishing Productivity of Azolla Ferns without Nitrogen Fertilizer. Front Plant Sci 8:442. [Abstract]
  • Snijder J, Schuller JM, Wiegard A, Lossl P, Schmelling N, Axmann IM, Plitzko JM, Forster F, Heck AJ (2017) Structures of the cyanobacterial circadian oscillator frozen in a fully assembled state. Science 355(6330):1181-1184. [Abstract]
  • Vollmer C, Weber APM, Wallenfang M, Hoffmann T, Mettler-Altmann T, Truse R, Bauer I, Picker O, Mathes AM (2017) Melatonin pretreatment improves gastric mucosal blood flow and maintains intestinal barrier function during hemorrhagic shock in dogs. Microcirculation doi: 10.1111/micc.12345 [Abstract]
  • Templer SE, Ammon A, Pscheidt D, Ciobotea O, Schuy C, McCollum C, Sonnewald U, Hanemann A, Forster J, Ordon F, von Korff M, Voll LM (2017) Metabolite profiling of barley flag leaves under drought and combined heat and drought stress reveals metabolic QTLs for metabolites associated with antioxidant defense. J Exp Bot. doi: 10.1093/jxb/erx038 [Abstract]
  • Arthaut LD, Jourdan N, Mteyrek A, Procopio M, El-Esawi M, d'Harlingue A, Bouchet PE, Witczak J, Ritz T, Klarsfeld A, Birman S, Usselman RJ, Hoecker U, Martino CF, Ahmad M (2017) Blue-light induced accumulation of reactive oxygen species is a consequence of the Drosophila cryptochrome photocycle. PLoS One 12(3):e0171836. [Abstract]
  • Frantzeskakis L, Courville KJ, Pluecker L, Kellner R, Kruse J, Brachmann A, Feldbrügge M, Göhre V (2017) The plant-dependent life cycle of Thecaphora thlaspeos: a smut fungus adapted to Brassicaceae. Molecular Plant-Microbe Interactions.doi: 10.1094/MPMI-08-16-0164-R [Abstract]
  • Kiefer C, Severing E, Karl R, Bergonzi S, Koch M, Tresch A, Coupland G (2017) Divergence of annual and perennial species in the Brassicaceae and the contribution of cis-acting variation at FLC orthologues. Molecular ecology:doi 10.1111/mec.14084 [Abstract]
  • Schmitz J, Srikanth NV, Hudig M, Poschmann G, Lercher MJ, Maurino VG (2017) The ancestors of diatoms evolved a unique mitochondrial dehydrogenase to oxidize photorespiratory glycolate. Photosynth Res.doi: 10.1007/s11120-017-0355-1 [Abstract]
  • Runions A, Tsiantis M, Prusinkiewicz P (2017) A common developmental program can produce diverse leaf shapes. New Phytologist: doi: 10.1111/nph.14449 [Abstract]
  • Rishmawi L, Bühler J, Jaegle B, Hülskamp M, Koornneef M (2017) Quantitative trait loci controlling leaf venation in Arabidopsis. Plant, cell & environment. [Abstract]
  • Cenci U, Bhattacharya D, Weber AP, Colleoni C, Subtil A, Ball SG (2017) Biotic Host-Pathogen Interactions As Major Drivers of Plastid Endosymbiosis. Trends in plant science. doi: 10.1016/j.tplants.2016.12.007 [Abstract]
  • Badia MB, Mans R, Lis AV, Tronconi MA, Arias CL, Maurino VG, Andreo CS, Drincovich MF, van Maris AJ, Gerrard Wheeler MC (2017) Specific Arabidopsis thaliana malic enzyme isoforms can provide anaplerotic pyruvate carboxylation function in Saccharomyces cerevisiae. FEBS J 284(4):654-665. [Abstract]
  • Beddow J, Stolpe B, Cole PA, Lead JR, Sapp M, Lyons BP, Colbeck I, Whitby C (2017) Nanosilver inhibits nitrification and reduces ammonia-oxidising bacterial but not archaeal amoA gene abundance in estuarine sediments. Environ Microbiol 19(2):500-510. [Abstract]
  • Flores-Tornero M, Anoman AD, Rosa-Tellez S, Toujani W, Weber AP, Eisenhut M, Kurz S, Alseekh S, Fernie AR, Munoz-Bertomeu J, Ros R (2017) Overexpression of the triose phosphate translocator (TPT) complements the abnormal metabolism and development of plastidial glycolytic glyceraldehyde-3-phosphate dehydrogenase mutants. The Plant journal : for cell and molecular biology 89(6):1146-1158. [Abstract]
  • Doehlemann G, Ökmen B, Zhu W, Sharon A (2017) Plant Pathogenic Fungi. Microbiol Spectr 5(1). [Abstract]
  • de Vries S, von Dahlen JK, Uhlmann C, Schnake A, Kloesges T, Rose LE (2017) Signatures of selection and host-adapted gene expression of the Phytophthora infestans RNA silencing suppressor PSR2. Molecular plant pathology 18(1):110-124. [Abstract]
  • Denton AK, Mass J, Külahoglu C, Lercher MJ, Bräutigam A, Weber AP (2017) Freeze-quenched maize mesophyll and bundle sheath separation uncovers bias in previous tissue-specific RNA-Seq data. Journal of experimental botany 68(2):147-160. [Abstract]
  • Monniaux M, McKim SM, Cartolano M, Thévenon E, Parcy F, Tsiantis M, Hay A (2017) Conservation vs divergence in LEAFY and APETALA1 functions between Arabidopsis thaliana and Cardamine hirsuta. New Phytologist: doi: 10.1111/nph.14419 [Abstract]
  • Nieberl P, Ehrl C, Pommerrenig B, Graus D, Marten I, Jung B, Ludewig F, Koch W, Harms K, Flügge UI, Neuhaus HE, Hedrich R, Sauer N (2017) Functional characterisation and cell specificity of BvSUT1, the transporter that loads sucrose into the phloem of sugar beet (Beta vulgaris L.) source leaves. Plant biology. [Abstract]
  • Eisenhut M, Bräutigam A, Timm S, Florian A, Tohge T, Fernie AR, Bauwe H, Weber AP (2017) Photorespiration Is Crucial for Dynamic Response of Photosynthetic Metabolism and Stomatal Movement to Altered CO2 Availability. Molecular plant 10(1):47-61. [Abstract]
  • Ejaz M, von Korff M (2017) The Genetic Control of Reproductive Development under High Ambient Temperature. Plant physiology 173(1):294-306. [Abstract]
  • Jung C, Pillen K, Staiger D, Coupland G, von Korff M (2017) Editorial: Recent Advances in Flowering Time Control. Frontiers in plant science 7(2011). [Abstract]
  • Pankin A, von Korff M (2017) Co-evolution of methods and thoughts in cereal domestication studies: a tale of barley (Hordeum vulgare). Current opinion in plant biology 36:15-21. [Abstract]
  • Schlüter U, Bräutigam A, Gowik U, Melzer M, Christin PA, Kurz S, Mettler-Altmann T, Weber AP (2017) Photosynthesis in C3-C4 intermediate Moricandia species. Journal of experimental botany 68(2):191-206. [Abstract]
  • Pokhilko A, Zhao J, Stark WM, Colloms SD, Ebenhöh O (2017) A simplified mathematical model of directional DNA site-specific recombination by serine integrases. Journal of the Royal Society, Interface / the Royal Society 14(126). [Abstract]
  • Katzke N, Knapp A, Loeschcke A, Drepper T, Jaeger KE (2017) Novel Tools for the Functional Expression of Metagenomic DNA. Methods in molecular biology 1539:159-196. [Abstract]
  • Lauterbach M, Billakurthi K, Kadereit G, Ludwig M, Westhoff P, Gowik U (2017) C3 cotyledons are followed by C4 leaves: intra-individual transcriptome analysis of Salsola soda (Chenopodiaceae). J Exp Bot 68(2):161-176. [Abstract]
  • Liller CB, Walla A, Boer MP, Hedley P, Macaulay M, Effgen S, von Korff M, van Esse GW, Koornneef M (2017) Fine mapping of a major QTL for awn length in barley using a multiparent mapping population. Theor Appl Genet 130(2):269-281. [Abstract]
  • Dombrowski N, Schlaeppi K, Agler MT, Hacquard S, Kemen E, Garrido-Oter R, Wunder J, Coupland G, Schulze-Lefert P (2017) Root microbiota dynamics of perennial Arabis alpina are dependent on soil residence time but independent of flowering time. ISME J 11(1):43-55. [Abstract]
  • Lundquist PK, Mantegazza O, Stefanski A, Stühler K, Weber AP (2017) Surveying the Oligomeric State of Arabidopsis thaliana Chloroplasts. Mol Plant 10(1):197-211. [Abstract]
  • Nakano RT, Pislewska-Bednarek M, Yamada K, Edger PP, Miyahara M, Kondo M, Bottcher C, Mori M, Nishimura M, Schulze-Lefert P, Hara-Nishimura I, Bednarek P (2017) PYK10 myrosinase reveals a functional coordination between endoplasmic reticulum bodies and glucosinolates in Arabidopsis thaliana. Plant J 89(2):204-220. [Abstract]
  • Li Y, Heckmann D, Lercher MJ, Maurino VG (2017) Combining genetic and evolutionary engineering to establish C4 metabolism in C3 plants. J Exp Bot 68(2):117-125. [Abstract]

To top

2016

  • van Roermund CWT, Schroers MG, Wiese J, Facchinelli F, Kurz S, Wilkinson S, Charton L, Wanders RJA, Waterham HR, Weber AP, Link N (2016) The Peroxisomal NAD Carrier from Arabidopsis Imports NAD in Exchange with AMP. Plant Physiol 171(3):2127-2139. [Abstract]
  • Geiser E, Reindl M, Blank LM, Feldbrugge M, Wierckx N, Schipper K (2016) Activating Intrinsic Carbohydrate-Active Enzymes of the Smut Fungus Ustilago maydis for the Degradation of Plant Cell Wall Components. Appl Environ Microbiol 82(17):5174-5185. [Abstract]
  • Colinas M, Eisenhut M, Tohge T, Pesquera M, Fernie AR, Weber AP, Fitzpatrick TB (2016) Balancing of B6Vitamers Is Essential for Plant Development and Metabolism in Arabidopsis. The Plant Cell 28(2):439-453. [Abstract]
  • Ball SG, Bhattacharya D, Weber AP (2016) Infection and the first eukaryotes—Response. Science 352(6289):1065-1066. [Abstract]
  • Ball SG, Bhattacharya D, Qiu H, Weber AP (2016) Commentary: Plastid establishment did not require a chlamydial partner. Front Cell Infect Microbiol 6:43. [Abstract]
  • Hussner A, Mettler-Altmann T, Weber APM, Sand-Jensen K (2016) Acclimation of photosynthesis to supersaturated CO2 in aquatic plant bicarbonate users. Freshwater Biology 61(10):1720-1732. [Abstract]
  • Sadowsky A, Mettler-Altmann T, Ott S (2016) Metabolic response to desiccation stress in strains of green algal photobionts (Trebouxia) from two Antarctic lichens of southern habitats. Phycologia 55(6):703-714. [Abstract]
  • Ploch S, Rose LE, Bass D, Bonkowski M (2016) High Diversity Revealed in Leaf-Associated Protists (Rhizaria: Cercozoa) of Brassicaceae. J Eukaryot Microbiol 63(5):635-641. [Abstract]
  • Heidel AJ, Kiefer C, Coupland G, Rose LE (2016) Pinpointing genes underlying annual/perennial transitions with comparative genomics. BMC genomics 17(1):921. [Abstract]
  • Samodelov SL, Beyer HM, Guo X, Augustin M, Jia K-P, Baz L, Ebenhöh O, Beyer P, Weber W, Al-Babili S, Zurbriggen MD (2016) StrigoQuant: A genetically encoded biosensor for quantifying strigolactone activity and specificity. Science Advances 2(11). [Abstract]
  • Advances in Botanical Research (2016) ed Stanislav K (Academic Press), Vol Volume 80. [Abstract]
  • Drincovich MF, Voll LM, Maurino VG (2016) Editorial: On the Diversity of Roles of Organic Acids. Frontiers in plant science 7(1592). [Abstract]
  • Christopher A, Hameister H, Corrigall H, Ebenhöh O, Müller B, Ullner E (2016) Modelling Robust Feedback Control Mechanisms That Ensure Reliable Coordination of Histone Gene Expression with DNA Replication. PloS one 11(10):e0165848. [Abstract]
  • Wawra S, Fesel P, Widmer H, Timm M, Seibel J, Leson L, Kesseler L, Nostadt R, Hilbert M, Langen G, Zuccaro A (2016) The fungal-specific β-glucan-binding lectin FGB1 alters cell-wall composition and suppresses glucan-triggered immunity in plants. Nature communications 7:13188. [Abstract]
  • Bösch, K., Frantzeskakis, L., Vraneš, M., Kämper, J., Schipper, K., Göhre, V. Genetic Manipulation of the Plant Pathogen Ustilago maydis to Study Fungal Biology and Plant Microbe Interactions. J. Vis. Exp. (115), e54522, doi:10.3791/54522 (2016). [Abstract]
  • Mai HJ, Pateyron S, Bauer P (2016) Iron homeostasis in Arabidopsis thaliana: transcriptomic analyses reveal novel FIT-regulated genes, iron deficiency marker genes and functional gene networks. BMC plant biology 16[Abstract]
  • Matuszyńska A, Heidari S, Jahns P, Ebenhöh O (2016) A mathematical model of non-photochemical quenching to study short-term light memory in plants. Biochimica et biophysica acta 1857(12):1860-1869. [Abstract]
  • Huang XY, Chao DY, Koprivova A, Danku J, Wirtz M, Müller S, Sandoval FJ, Bauwe H, Roje S, Dilkes B, Hell R, Kopriva S, Salt DE (2016) Nuclear Localised MORE SULPHUR ACCUMULATION1 Epigenetically Regulates Sulphur Homeostasis in Arabidopsis thaliana. PLoS genetics 12(9):e1006298. [Abstract]
  • Jaegle B, Uroic MK, Holtkotte X, Lucas C, Termath AO, Schmalz HG, Bucher M, Hoecker U, Hülskamp M, Schrader A (2016) A fast and simple LC-MS-based characterization of the flavonoid biosynthesis pathway for few seed(ling)s. BMC plant biology 16(1):190. [Abstract]
  • Koprivova A, Kopriva S (2016) The importance of having sulfur. J Genet Genomics. [Abstract]
  • Matei A, Doehlemann G (2016) Cell biology of corn smut disease-Ustilago maydis as a model for biotrophic interactions. Current opinion in microbiology 34:60-66. [Abstract]
  • Beddow J, Stolpe B, Cole PA, Lead JR, Sapp M, Lyons BP, Colbeck I, Whitby C (2016) Nanosilver inhibits nitrification and reduces ammonia-oxidising bacterial but not archaeal amoA gene abundance in estuarine sediments. Environ Microbiol. [Abstract]
  • Breiden M, Simon R (2016) Q&A: How does peptide signaling direct plant development? BMC biology 14:58. [Abstract]
  • Chan KX, Mabbitt PD, Phua SY, Mueller JW, Nisar N, * Gigolashvili T, Stroeher E, Grassl J, Arlt W, Estavillo GM, Jackson CJ, Pogson BJ (2016) Sensing and signaling of oxidative stress in chloroplasts by inactivation of the SAL1 phosphoadenosine phosphatase. Proceedings of the National Academy of Sciences of the United States of America 113(31):E4567-4576. [Abstract]
  • Digel B, Tavakol E, Verderio G, Tondelli A, Xu X, Cattivelli L, Rossini L, von Korff M (2016) Photoperiod-H1 (Ppd-H1) Controls Leaf Size. Plant physiology 172(1):405-415. [Abstract]
  • He Z, Zhang H, Gao S, Lercher MJ, Chen WH, Hu S (2016) Evolview v2: an online visualization and management tool for customized and annotated phylogenetic trees. Nucleic acids research 44(W1):W236-241. [Abstract]
  • Chen WH, Lu G, Bork P, Hu S, Lercher MJ (2016) Energy efficiency trade-offs drive nucleotide usage in transcribed regions. Nature communications 7:11334. [Abstract]
  • Hay A, Tsiantis M (2016) Cardamine hirsuta: a comparative view. Current opinion in genetics & development 39:1-7. [Abstract]
  • Szappanos B, Fritzemeier J, Csorgo B, Lazar V, Lu X, Fekete G, Balint B, Herczeg R, Nagy I, Notebaart RA, Lercher MJ, Pal C, Papp B (2016) Adaptive evolution of complex innovations through stepwise metabolic niche expansion. Nature communications 7:11607. [Abstract]
  • Hyun Y, Richter R, Vincent C, Martinez-Gallegos R, Porri A, Coupland G (2016) Multi-layered Regulation of SPL15 and Cooperation with SOC1 Integrate Endogenous Flowering Pathways at the Arabidopsis Shoot Meristem. Dev Cell 37(3):254-266. [Abstract]
  • Fernandez V, Takahashi Y, Le Gourrierec J, Coupland G (2016) Photoperiodic and thermosensory pathways interact through CONSTANS to promote flowering at high temperature under short days. The Plant journal : for cell and molecular biology 86(5):426-440. [Abstract]
  • Hartleb D, Jarre F, Lercher MJ (2016) Improved Metabolic Models for E. coli and Mycoplasma genitalium from GlobalFit, an Algorithm That Simultaneously Matches Growth and Non-Growth Data Sets. PLoS Comput Biol 12(8):e1005036. [Abstract]
  • Koprivova A, Kopriva S (2016) The importance of having sulfur. J Genet Genomics. [Abstract]
  • de Vries S, von Dahlen JK, Uhlmann C, Schnake A, Kloesges T, Rose LE (2016) Signatures of selection and host adapted gene expression of the Phytophthora infestans RNA-silencing suppressor PSR2. Molecular plant pathology. [Abstract]
  • Misas-Villamil JC, van der Hoorn RA, Doehlemann G (2016) Papain-like cysteine proteases as hubs in plant immunity. The New phytologist. [Abstract]
  • Chen S, Wirthmueller L, Stauber J, Lory N, Holtkotte X, Leson L, Schenkel C, Ahmad M, Hoecker U (2016) The functional divergence between SPA1 and SPA2 in Arabidopsis photomorphogenesis maps primarily to the respective N-terminal kinase-like domain. BMC plant biology 16(1):165. [Abstract]
  • Xu J, Bräutigam A, Li Y, Weber AP, Zhu XG (2016) Systems analysis of cis-regulatory motifs in C4 photosynthesis genes using maize and rice leaf transcriptomic data during a process of de-etiolation. Journal of experimental botany. [Abstract]
  • Pokhilko A, Zhao J, Ebenhöh O, Smith MC, Stark WM, Colloms SD (2016) The mechanism of varphiC31 integrase directionality: experimental analysis and computational modelling. Nucleic acids research. [Abstract]
  • Lehmann MM, Wegener F, Barthel M, Maurino VG, Siegwolf RT, Buchmann N, Werner C, Werner RA (2016) Metabolic Fate of the Carboxyl Groups of Malate and Pyruvate and their Influence on delta(13)C of Leaf-Respired CO2 during Light Enhanced Dark Respiration. Frontiers in plant science 7:739. [Abstract]
  • Rovenich H, Zuccaro A, Thomma BP (2016) Convergent evolution of filamentous microbes towards evasion of glycan-triggered immunity. The New phytologist. [Abstract]
  • Holtkotte X, Dieterle S, Kokkelink L, Artz O, Leson L, Fittinghoff K, Hayama R, Ahmad M, Hoecker U (2016) Mutations in the N-terminal kinase-like domain of the repressor of photomorphogenesis SPA1 severely impair SPA1 function but not light responsiveness in Arabidopsis. The Plant journal : for cell and molecular biology. [Abstract]
  • Reimann S, Poschmann G, Kanonenberg K, Stühler K, Smits Sander HJ, Schmitt L (2016) Interdomain regulation of the ATPase activity of the ABC transporter haemolysin B from Escherichia coli. Biochemical Journal 473(16):2471-2483. [Abstract]
  • Fesel PH, Zuccaro A (2016) Dissecting endophytic lifestyle along the parasitism/mutualism continuum in Arabidopsis. Current opinion in microbiology 32:103-112. [Abstract]
  • Bombarely A, Moser M, Amrad A, Bao M, Bapaume L, Barry CS, Bliek M, Boersma MR, Borghi L, Bruggmann R, Bucher M, D’Agostino N, Davies K, Druege U, Dudareva N, Egea-Cortines M, Delledonne M, Fernandez-Pozo N, Franken P, Grandont L, Heslop-Harrison JS, Hintzsche J, Johns M, Koes R, Lv X, Lyons E, Malla D, Martinoia E, Mattson NS, Morel P, Mueller LA, Muhlemann J, Nouri E, Passeri V, Pezzotti M, Qi Q, Reinhardt D, Rich M, Richert-Poggeler KR, Robbins TP, Schatz MC, Schranz ME, Schuurink RC, Schwarzacher T, Spelt K, Tang H, Urbanus SL, Vandenbussche M, Vijverberg K, Villarino GH, Warner RM, Weiss J, Yue Z, Zethof J, Quattrocchio F, Sims TL, Kuhlemeier C (2016) Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida. Nat Plants 2(6):16074. [Abstract]
  • Taniguchi M, Weber AP, von Caemmerer S (2016) Future Research into C4 Biology. Plant & cell physiology 57(5):879-880. [Abstract]
  • Weiss M, Waller F, Zuccaro A, Selosse MA (2016) Sebacinales – one thousand and one interactions with land plants. The New phytologist 211(1):20-40. [Abstract]
  • Braguy J, Zurbriggen MD (2016) Synthetic strategies for plant signalling studies: molecular toolbox and orthogonal platforms. The Plant journal : for cell and molecular biology. [Abstract]
  • Koprivova A, Kopriva S (2016) Sulfation pathways in plants. Chem Biol Interact. [Abstract]
  • Hacquard S, Kracher B, Hiruma K, Munch PC, Garrido-Oter R, Thon MR, Weimann A, Damm U, Dallery JF, Hainaut M, Henrissat B, Lespinet O, Sacristan S, Ver Loren van Themaat E, Kemen E, McHardy AC, Schulze-Lefert P, O’Connell RJ (2016) Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi. Nature communications 7:11362. [Abstract]
  • Bemm F, Becker D, Larisch C, Kreuzer I, Escalante-Perez M, Schulze WX, Ankenbrand M, Van de Weyer AL, Krol E, Al-Rasheid KA, Mithofer A, Weber AP, Schultz J, Hedrich R (2016) Venus flytrap carnivorous lifestyle builds on herbivore defense strategies. Genome Res 26(6):812-825. [Abstract]
  • He Z, Zhang H, Gao S, Lercher MJ, Chen WH, Hu S (2016) Evolview v2: an online visualization and management tool for customized and annotated phylogenetic trees. Nucleic acids research. [Abstract]
  • Feike D, Seung D, Graf A, Bischof S, Ellick T, Coiro M, Soyk S, Eicke S, Mettler-Altmann T, Lu KJ, Trick M, Zeeman SC, Smith AM (2016) The Starch Granule-Associated Protein EARLY STARVATION1 Is Required for the Control of Starch Degradation in Arabidopsis thaliana Leaves. The Plant cell 28(6):1472-1489. [Abstract]
  • Mackinder LCM, Meyer MT, Mettler-Altmann T, Chen VK, Mitchell MC, Caspari O, Freeman Rosenzweig ES, Pallesen L, Reeves G, Itakura A, Roth R, Sommer F, Geimer S, Mühlhaus T, Schroda M, Goodenough U, Stitt M, Griffiths H, Jonikas MC (2016) A repeat protein links Rubisco to form the eukaryotic carbon-concentrating organelle. Proceedings of the National Academy of Sciences 113(21):5958-5963. [Abstract]
  • Schlüter U, Denton AK, Bräutigam A (2016) Understanding metabolite transport and metabolism in C4 plants through RNA-seq. Current opinion in plant biology 31:83-90. [Abstract]
  • Hiruma K, Gerlach N, Sacristan S, Nakano RT, Hacquard S, Kracher B, Neumann U, Ramirez D, Bucher M, O’Connell RJ, Schulze-Lefert P (2016) Root Endophyte Colletotrichum tofieldiae Confers Plant Fitness Benefits that Are Phosphate Status Dependent. Cell. [Abstract]
  • Schuler ML, Mantegazza O, Weber AP (2016) Engineering C photosynthesis into C chassis in the synthetic biology age. The Plant journal : for cell and molecular biology. [Abstract]
  • Rademacher N, Kern R, Fujiwara T, Mettler-Altmann T, Miyagishima SY, Hagemann M, Eisenhut M, Weber AP (2016) Photorespiratory glycolate oxidase is essential for the survival of the red alga Cyanidioschyzon merolae under ambient CO2 conditions. Journal of experimental botany. [Abstract]
  • Hodges M, Dellero Y, Keech O, Betti M, Raghavendra AS, Sage R, Zhu XG, Allen DK, Weber AP (2016) Perspectives for a better understanding of the metabolic integration of photorespiration within a complex plant primary metabolism network. Journal of experimental botany. [Abstract]
  • Dellero Y, Jossier M, Schmitz J, Maurino VG, Hodges M (2016) Photorespiratory glycolate-glyoxylate metabolism. Journal of experimental botany. [Abstract]
  • Döring F, Streubel M, Bräutigam A, Gowik U (2016) Most photorespiratory genes are preferentially expressed in the bundle sheath cells of the C4 grass Sorghum bicolor. Journal of experimental botany. [Abstract]
  • Betti M, Bauwe H, Busch FA, Fernie AR, Keech O, Levey M, Ort DR, Parry MA, Sage R, Timm S, Walker B, Weber AP (2016) Manipulating photorespiration to increase plant productivity: recent advances and perspectives for crop improvement. Journal of experimental botany. [Abstract]
  • Hagemann M, Kern R, Maurino VG, Hanson DT, Weber AP, Sage RF, Bauwe H (2016) Evolution of photorespiration from cyanobacteria to land plants, considering protein phylogenies and acquisition of carbon concentrating mechanisms. Journal of experimental botany. [Abstract],
  • Calderwood A, Kopriva S, Morris RJ (2016) Transcript Abundance Explains mRNA Mobility Data in Arabidopsis thaliana. The Plant cell 28(3):610-615. [Abstract]
    [Recommendation in F1000]
  • Ochoa-Fernandez R, Samodelov SL, Brandl SM, Wehinger E, Muller K, Weber W, Zurbriggen MD (2016) Erratum to: Optogenetics in Plants: Red/Far-Red Light Control of Gene Expression. Methods Mol Biol 1408:E1. [Abstract]
  • Smith RW, Helwig B, Westphal AH, Pel E, Horner M, Beyer HM, Samodelov SL, Weber W, Zurbriggen MD, Borst JW, Fleck C (2016) Unearthing the transition rates between photoreceptor conformers. BMC Syst Biol 10(1):110. [Abstract]
  • Ball SG, Bhattacharya D, Weber AP (2016) EVOLUTION. Pathogen to powerhouse. Science 351(6274):659-660. [Abstract]
  • Bräutigam A, Gowik U (2016) Photorespiration connects C3 and C4 photosynthesis. Journal of experimental botany. [Abstract]
  • Schlüter U, Weber AP (2016) The Road to C4 Photosynthesis: Evolution of a Complex Trait via Intermediary States. Plant & cell physiology. [Abstract]
  • Agler MT, Ruhe J, Kroll S, Morhenn C, Kim ST, Weigel D, Kemen EM (2016) Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation. PLoS biology 14(1):e1002352. [Abstract]
  • Bernsdorff F, Döring AC, Gruner K, Schuck S, Bräutigam A, Zeier J (2016) Pipecolic Acid Orchestrates Plant Systemic Acquired Resistance and Defense Priming via Salicylic Acid-Dependent and -Independent Pathways. The Plant cell 28(1):102-129. [Abstract]
  • Brumbarova T, Le CT, Ivanov R, Bauer P (2016) Regulation of ZAT12 protein stability: the role of hydrogen peroxide. Plant signaling & behavior:0. [Abstract]
  • Frerigmann H, Pislewska-Bednarek M, Sanchez-Vallet A, Molina A, Glawischnig E, Gigolashvili T, Bednarek P (2016) Regulation of pathogen triggered tryptophan metabolism in Arabidopsis thaliana by MYB transcription factors and indole glucosinolate conversion products. Molecular plant. [Abstract]
  • Koprivova A, Kopriva S (2016) Hormonal control of sulfate uptake and assimilation. Plant molecular biology. [Abstract]
  • Yanai I, Lercher MJ (2016) Forty years of The Selfish Gene are not enough. Genome biology 17:39. [Abstract]
  • Sheehan H, Moser M, Klahre U, Esfeld K, Dell’Olivo A, Mandel T, Metzger S, Vandenbussche M, Freitas L, Kuhlemeier C (2016) MYB-FL controls gain and loss of floral UV absorbance, a key trait affecting pollinator preference and reproductive isolation. Nature genetics 48(2):159-166. [Abstract]
  • Stahl E, Bellwon P, Huber S, Schlaeppi K, Bernsdorff F, Vallat-Michel A, Mauch F, Zeier J (2016) Regulatory and functional aspects of indolic metabolism in plant systemic acquired resistance. Molecular plant. [Abstract]
  • Abdallah HB, Bauer P (2016) Quantitative Reverse Transcription-qPCR-Based Gene Expression Analysis in Plants. Methods in molecular biology 1363:9-24. [Abstract]
  • Wang Q, Hasson A, Rossmann S, Theres K (2016) Divide et impera: boundaries shape the plant body and initiate new meristems. New Phytologist 209(2):485-498. [Abstract]
  • Le CTT, Brumbarova T, Ivanov R, Stoof C, Weber E, Mohrbacher J, Fink-Straube C, Bauer P (2016) ZINC FINGER OF ARABIDOPSIS THALIANA12 (ZAT12) Interacts with FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR (FIT) Linking Iron Deficiency and Oxidative Stress Responses. Plant physiology 170(1):540-557. [Abstract]

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2015

  • Kolar K, Wischhusen HM, Muller K, Karlsson M, Weber W, Zurbriggen MD (2015) A synthetic mammalian network to compute population borders based on engineered reciprocal cell-cell communication. BMC Syst Biol 9:97. [Abstract]
  • Pires MV, Junior AA, Medeiros DB, Daloso DM, Pham PA, Barros KA, Engqvist MK, Florian A, Krahnert I, Maurino VG, Araujo WL, Fernie AR (2015) The influence of alternative pathways of respiration that utilize branched-chain amino acids following water shortage in Arabidopsis. Plant, cell & environment. [Abstract]
  • Matuszyńska A, Ebenhöh O (2015) A reductionist approach to model photosynthetic self-regulation in eukaryotes in response to light. Biochemical Society transactions 43(6):1133-1139. [Abstract]
  • Kopriva S, Calderwood A, Weckopp SC, Koprivova A (2015) Plant sulfur and Big Data. Plant science : an international journal of experimental plant biology 241:1-10. [Abstract]
  • Brych A, Mascarenhas J, Jaeger E, Charkiewicz E, Pokorny R, Bölker M, Doehlemann G, Batschauer A (2015) White collar 1-induced photolyase expression contributes to UV-tolerance of Ustilago maydis. Microbiology[Abstract]
  • Brilhaus D, Bräutigam A, Mettler-Altmann T, Winter K, Weber APM (2016) Reversible Burst of Transcriptional Changes during Induction of Crassulacean Acid Metabolism in Talinum triangulare. Plant physiology 170(1):102-122.[Abstract]
  • Fesel PH, Zuccaro A (2015) beta-glucan: Crucial component of the fungal cell wall and elusive MAMP in plants. Fungal genetics and biology : FG & B*. [Abstract]
  • Bai Y, Müller, D. B., Srinivas, G., Garrido-Oter, R., Potthoff, E., Rott, M., Dombrowski, N., Münch, P.C., Spaepen, S., Remus-Emsermann, M., Hüttel, B., McHardy, A., Vorholt, J.A., Schulze-Lefert, P (2015) Functional overlap of the Arabidopsis leaf and root microbiotas. Nature.[Abstract]
  • Langner T, Göhre V (2015) Fungal chitinases: function, regulation, and potential roles in plant/pathogen interactions. Current genetics.[Abstract]
  • Aghajanzadeh T, Kopriva S, Hawkesford MJ, Koprivova A, De Kok LJ (2015) Atmospheric H2S and SO2 as sulfur source for Brassica juncea and Brassica rapa: impact on the glucosinolate composition. Frontiers in plant science 6:924 [Abstract]
  • Abedpour N, Kollmann M (2015) Resource constrained flux balance analysis predicts selective pressure on the global structure of metabolic networks. BMC systems biology 9(1):88. [Abstract]
  • de Vries S, Kloesges T, Rose LE (2015) Evolutionarily dynamic, but robust, targeting of resistance genes by the miR482/2118 gene family in the Solanaceae. Genome biology and evolution. [Abstract]
  • Kopriva S (2015) Partitioning of sulfur between primary and secondary metabolism. Sulfur Metabolism in Plants – Molecular Physiology and Ecophysiology of Sulfur, ed De Kok LJ, Hawkesford, M., Rennenberg, H., Saito, K., Schnug, E (Springer), pp 11-20.
  • Mulki MA, von Korff M (2015) CONSTANS controls floral repression by upregulating VERNALIZATION 2 (Vrn-H2) in barley. Plant physiology. [Abstract]
  • Abdallah HB, Bauer P (2016) Quantitative Reverse Transcription-qPCR-Based Gene Expression Analysis in Plants. Methods in molecular biology 1363:9-24. [Abstract]
  • Domröse A, Klein AS, Hage-Hülsmann J, Thies S, Svensson V, Classen T, Pietruszka J, Jaeger KE, Drepper T, Loeschcke A (2015) Efficient recombinant production of prodigiosin in Pseudomonas putida. Frontiers in microbiology 6:972. [Abstract]
  • Cui H, Tsuda K, Parker JE (2015) Effector-triggered immunity: from pathogen perception to robust defense. Annual review of plant biology 66:487-511. [Abstract]
  • Bühler J, Rishmawi L, Pflugfelder D, Huber G, Scharr H, Hülskamp M, Koornneef M, Schurr U, Jahnke S (2015) phenoVein – A tool for leaf vein segmentation and analysis. Plant physiology. [Abstract]
  • Kottb M, Gigolashvili T, Grosskinsky DK, Piechulla B (2015) Trichoderma volatiles effecting Arabidopsis: from inhibition to protection against phytopathogenic fungi. Frontiers in microbiology 6:995. [Abstract]
  • Badia MB, Arias CL, Tronconi MA, Maurino VG, Andreo CS, Drincovich MF, Wheeler MC (2015) Enhanced cytosolic NADP-ME2 activity in A. thaliana affects plant development, stress tolerance and specific diurnal and nocturnal cellular processes. Plant science 240:193-203. [Abstract]
  • Liller CB, Neuhaus R, von Korff M, Koornneef M, van Esse W (2015) Mutations in Barley Row Type Genes Have Pleiotropic Effects on Shoot Branching. PloS one 10(10):e0140246. [Abstract]
  • Mentink RA, Tsiantis M (2015) From limbs to leaves: common themes in evolutionary diversification of organ form. Frontiers in genetics 6:284. [Abstract]
  • Weber AP (2015) Discovering New Biology through Sequencing of RNA. * Plant physiology 169(3):1524-1531. [Abstract]
  • Vom Dorp K, Holzl G, Plohmann C, Eisenhut M, Abraham M, Weber AP, Hanson AD, Dormann P (2015) Remobilization of Phytol from Chlorophyll Degradation Is Essential for Tocopherol Synthesis and Growth of Arabidopsis. The Plant cell. [Abstract]
  • Banhara A, Ding Y, Kuhner R, Zuccaro A, Parniske M (2015) Colonization of root cells and plant growth promotion by Piriformospora indica occurs independently of plant common symbiosis genes. Frontiers in plant science 6:667. [Abstract]
  • Adlakha N, Pfau T, Ebenhöh O, Yazdani SS (2015) Insight into metabolic pathways of the potential biofuel producer, Paenibacillus polymyxa ICGEB2008. Biotechnology for biofuels 8:159. [Abstract]
  • Cartolano M, Pieper B, Lempe J, Tattersall A, Huijser P, Tresch A, Darrah PR, Hay A, Tsiantis M (2015) Heterochrony underpins natural variation in Cardamine hirsuta leaf form. Proceedings of the National Academy of Sciences of the United States of America 112(33):10539-10544. [Abstract]
  • Le Roux C, Huet G, Jauneau A, Camborde L, Tremousaygue D, Kraut A, Zhou B, Levaillant M, Adachi H, Yoshioka H, Raffaele S, Berthome R, Coute Y, Parker JE, Deslandes L (2015) A receptor pair with an integrated decoy converts pathogen disabling of transcription factors to immunity. Cell 161(5):1074-1088. [Abstract]
  • Chen S, Lory N, Stauber J, Hoecker U (2015) Photoreceptor Specificity in the Light-Induced and COP1-Mediated Rapid Degradation of the Repressor of Photomorphogenesis SPA2 in Arabidopsis. PLoS genetics 11(9):e1005516. [Abstract]
  • Redkar A, Villajuana-Bonequi M, Doehlemann G (2015) Conservation of the Ustilago maydis Effector See1 in related smuts. Plant signaling & behavior:0 [Abstract]
  • Digel B, Pankin A, von Korff M (2015) Global Transcriptome Profiling of Developing Leaf and Shoot Apices Reveals Distinct Genetic and Environmental Control of Floral Transition and Inflorescence Development in Barley. The Plant cell. [Abstract]
  • Kopriva S (2015) Plant sulfur nutrition: from Sachs to Big Data. Plant signaling & behavior[Abstract]
  • Czyzewicz N, Wildhagen M, Cattaneo P, Stahl Y, Pinto KG, Aalen RB, Butenko MA, Simon R, Hardtke CS, De Smet I (2015) Antagonistic peptide technology for functional dissection of CLE peptides revisited. Journal of experimental botany. [Abstract]
  • Haag C, Steuten B, Feldbrügge M (2015) Membrane-Coupled mRNA Trafficking in Fungi. Annual review of microbiology. [Abstract]
  • Somssich M, Ma Q, Weidtkamp-Peters S, Stahl Y, Felekyan S, Bleckmann A, Seidel CA, Simon R (2015) Real-time dynamics of peptide ligand-dependent receptor complex formation in planta. Science signaling 8(388):ra76. [Abstract]
  • Vijayakumar V, Liebisch G, Buer B, Xue L, Gerlach N, Blau S, Schmitz J, Bucher M (2015) Integrated multi-omics analysis supports role of lysophosphatidylcholine and related glycerophospholipids in the Lotus japonicus-Glomus intraradices mycorrhizal symbiosis. Plant, cell & environment. [Abstract]
  • Lenders MH, Weidtkamp-Peters S, Kleinschrodt D, Jaeger KE, Smits SH, Schmitt L (2015) Directionality of substrate translocation of the hemolysin A Type I secretion system. Scientific reports 5:12470. [Abstract]
  • Maurino VG, Engqvist MKM (2015) 2-Hydroxy acids in plant metabolism. The Arabidopsis Book 13: e0182. 2015. [Abstract]
  • Frerigmann H, Glawischnig E, Gigolashvili T (2015) The role of MYB34, MYB51 and MYB122 in the regulation of camalexin biosynthesis in Arabidopsis thaliana. Plant Metabolism and Chemodiversity. [Abstract]
  • Engqvist MKM, Schmitz J, Gertzmann A, Florian A, Jaspert N, Arif M, Balazadeh S, Mueller-Roeber B, Fernie AR and Maurino VG (2015) GOX3, a glycolate oxidase homologue of yeast L-lactate cytochrome c oxidorreductase, supports L-lactate oxidation in roots of Arabidopsis thaliana. Plant Physiology. [Abstract]
  • Hüdig M, Maier A, Scherrers I, Seidel L, Jansen EEW, Mettler-Altmann T, Engqvist MKM and Maurino VG (2015) Plants Possess a Cyclic Mitochondrial Metabolic Pathway similar to the Mammalian Metabolic Repair Mechanism Involving Malate Dehydrogenase and L-2hydroxyglutarate Dehydrogenase. Plant & Cell Physiology. [Abstract]
  • Ort DR, Merchant SS, Alric J, Barkan A, Blankenship RE, Bock R, Croce R, Hanson MR, Hibberd JM, Long SP, Moore TA, Moroney J, Niyogi KK, Parry MA, Peralta-Yahya PP, Prince RC, Redding KE, Spalding MH, van Wijk KJ, Vermaas WF, von Caemmerer S, Weber AP, Yeates TO, Yuan JS, Zhu XG (2015) Redesigning photosynthesis to sustainably meet global food and bioenergy demand. Proceedings of the National Academy of Sciences of the United States of America 112(28):8529-8536. [Abstract]
  • Soto D, Cordoba JP, Villarreal F, Bartoli C, Schmitz J, Maurino VG, Braun HP, Pagnussat GC, Zabaleta E (2015) Functional characterization of mutants affected in the carbonic anhydrase domain of the respiratory complex I in Arabidopsis thaliana. The Plant journal : for cell and molecular biology. [Abstract]
  • Steffens A, Bräutigam A, Jakoby M, Hülskamp M (2015) The BEACH Domain Protein SPIRRIG Is Essential for Arabidopsis Salt Stress Tolerance and Functions as a Regulator of Transcript Stabilization and Localization. PLoS biology 13(7):e1002188. [Abstract]
  • Butenko MA, Simon R (2015) Beyond the meristems: similarities in the CLAVATA3 and INFLORESCENCE DEFICIENT IN ABSCISSION peptide mediated signalling pathways. Journal of experimental botany.
    [Abstract]
  • Mai HJ, Lindermayr C, von Toerne C, Fink-Straube C, Durner J, Bauer P (2015) Iron and FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-dependent regulation of proteins and genes in Arabidopsis thaliana roots. Proteomics. [Abstract]
  • Lahrmann U, Strehmel N, Langen G, Frerigmann H, Leson L, Ding Y, Scheel D, Herklotz S, Hilbert M, Zuccaro A (2015) Mutualistic root endophytism is not associated with the reduction of saprotrophic traits and requires a noncompromised plant innate immunity. The New phytologist 207(3):841-857. [Abstract]
  • Loeschcke A, Thies S (2015) Pseudomonas putida-a versatile host for the production of natural products. Appl Microbiol Biotechnol. [Abstract]
  • Göhre V (2015) Immune responses: Photosynthetic defence. Nature Plants 1.[Abstract]
  • Hemetsberger C, Mueller AN, Matei A, Herrberger C, Hensel G, Kumlehn J, Mishra B, Sharma R, Thines M, Huckelhoven R, Doehlemann G (2015) The fungal core effector Pep1 is conserved across smuts of dicots and monocots. The New phytologist 206(3):1116-1126. [Abstract]
  • Zhu L, Bu Q, Xu X, Paik I, Huang X, Hoecker U, Deng XW, Huq E (2015) CUL4 forms an E3 ligase with COP1 and SPA to promote light-induced degradation of PIF1. Nature communications 6:7245. [Abstract]
  • Pohlmann T, Baumann S, Haag C, Albrecht M, Feldbrügge M (2015) A FYVE zinc finger domain protein specifically links mRNA transport to endosome trafficking. eLife 4. [Abstract]
  • Langner T, Özturk M, Hartmann S, Cord-Landwehr S, Moerschbacher B, Walton JD, Göhre V (2015) Chitinases are essential for cell separation in Ustilago maydis. Eukaryotic cell. [Abstract]
  • Simon S, Ruhl M, de Montaigu A, Wotzel S, Coupland G (2015) Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae. Molecular biology and evolution.[Abstract]
  • Khonsari AS, Kollmann M (2015) Perception and regulatory principles of microbial growth control. PloS one 10(5):e0126244. [Abstract]
  • Lyu MJ, Gowik U, Kelly S, Covshoff S, Mallmann J, Westhoff P, Hibberd JM, Stata M, Sage RF, Lu H, Wei X, Wong GK, Zhu XG (2015) RNA-Seq based phylogeny recapitulates previous phylogeny of the genus Flaveria (Asteraceae) with some modifications. BMC evolutionary biology 15:116. [Abstract]
  • Lo Presti L, Lanver D, Schweizer G, Tanaka S, Liang L, Tollot M, Zuccaro A, Reissmann S, Kahmann R (2015) Fungal effectors and plant susceptibility. Annual review of plant biology 66:513-545. [Abstract]
  • Hacquard S, Garrido-Oter R, Gonzalez A, Spaepen S, Ackermann G, Lebeis S, McHardy AC, Dangl JL, Knight R, Ley R, Schulze-Lefert P (2015) Microbiota and Host Nutrition across Plant and Animal Kingdoms. Cell host & microbe 17(5):603-616. [Abstract]
  • Strand DD, Livingston AK, Satoh-Cruz M, Froehlich JE, Maurino VG, Kramer DM (2015) Activation of cyclic electron flow by hydrogen peroxide in vivo. Proceedings of the National Academy of Sciences of the United States of America 112(17):5539-5544. [Abstract]
  • Karkar S, Facchinelli F, Price DC, Weber AP, Bhattacharya D (2015) Metabolic connectivity as a driver of host and endosymbiont integration. Proceedings of the National Academy of Sciences of the United States of America. [Abstract]
  • Desouki AA, Jarre F, Gelius-Dietrich G, Lercher MJ (2015) CycleFreeFlux: efficient removal of thermodynamically infeasible loops from flux distributions. Bioinformatics.[Abstract]
  • Redkar A, Hoser R, Schilling L, Zechmann B, Krzymowska M, Walbot V, Doehlemann G (2015) A Secreted Effector Protein of Ustilago maydis Guides Maize Leaf Cells to Form Tumors. The Plant cell. [Abstract]
  • Baumann S, Takeshita N, Grun N, Fischer R, Feldbrügge M (2015) Live cell imaging of endosomal trafficking in fungi. Methods in molecular biology 1270:347-363. [Abstract]
  • Bulgarelli D, Garrido-Oter R, Münch PC, Weiman A, Dröge J, Pan Y, McHardy AC, Schulze-Lefert P (2015) Structure and function of the bacterial root microbiota in wild and domesticated barley. Cell host & microbe 17(3):392-403. [Abstract]
  • Kohler A, Kuo A, Nagy LG, Morin E, Barry KW, Buscot F, Canback B, Choi C, Cichocki N, Clum A, Colpaert J, Copeland A, Costa MD, Dore J, Floudas D, Gay G, Girlanda M, Henrissat B, Herrmann S, Hess J, Hogberg N, Johansson T, Khouja HR, LaButti K, Lahrmann U, Levasseur A, Lindquist EA, Lipzen A, Marmeisse R, Martino E, Murat C, Ngan CY, Nehls U, Plett JM, Pringle A, Ohm RA, Perotto S, Peter M, Riley R, Rineau F, Ruytinx J, Salamov A, Shah F, Sun H, Tarkka M, Tritt A, Veneault-Fourrey C, Zuccaro A, Mycorrhizal Genomics Initiative C, Tunlid A, Grigoriev IV, Hibbett DS, & Martin F (2015) Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists. Nature genetics. doi 10.1038/ng.3223 [Abstract]
  • Willing E-M, Rawat V, Mandáková T, Maumus F, James GV, Nordström KJV, Becker C, Warthmann N, Chica C, Szarzynska B, Zytnicki M, Albani MC, Kiefer C, Bergonzi S, Castaings L, Mateos JL, Berns MC, Bujdoso N, Piofczyk T, de Lorenzo L, Barrero-Sicilia C, Mateos I, Piednoël M, Hagmann J, Chen-Min-Tao R, Iglesias-Fernández R, Schuster SC, Alonso-Blanco C, Roudier F, Carbonero P, Paz-Ares J, Davis SJ, Pecinka A, Quesneville H, Colot V, Lysak MA, Weigel D, Coupland G, & Schneeberger K (2015) Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation. Nature Plants 1. [Abstract]
  • Hyun Y, Kim J, Cho SW, Choi Y, Kim JS, & Coupland G (2015) Site-directed mutagenesis in Arabidopsis thaliana using dividing tissue-targeted RGEN of the CRISPR/Cas system to generate heritable null alleles. Planta 241(1):271-284. [Abstract]
  • Ordoñez-Herrera N, Fackendahl P, Yu X, Schaefer S, Koncz C, & Hoecker U (2015) A cop1 spa Mutant Deficient in COP1 and SPA Proteins Reveals Partial Co-Action of COP1 and SPA during Arabidopsis Post-Embryonic Development and Photomorphogenesis. Molecular plant (0).[Abstract]
  • Pade N, Linka N, Ruth W, Weber AP, & Hagemann M (2015) Floridoside and isofloridoside are synthesized by trehalose 6-phosphate synthase-like enzymes in the red alga Galdieria sulphuraria. The New phytologist 205(3):1227-1238.[Abstract]
  • Pokhilko A & Ebenhöh O (2015) Mathematical modelling of diurnal regulation of carbohydrate allocation by osmo-related processes in plants. Journal of the Royal Society, Interface / the Royal Society 12(104).[Abstract]
  • Pokhilko A, Bou-Torrent J, Pulido P, Rodriguez-Concepcion M, & Ebenhöh O (2015) Mathematical modelling of the diurnal regulation of the MEP pathway in Arabidopsis. The New phytologist. [Abstract]
  • Gerlach N, Schmitz J, Polatajko A, Schluter U, Fahnenstich H, Witt S, Fernie AR, Uroic K, Scholz U, Sonnewald U, & Bucher M (2015) An integrated functional approach to dissect systemic responses in maize to arbuscular mycorrhizal symbiosis. Plant, cell & environment. [Abstract]
  • Zhao Y, Wang J, Liu Y, Miao H, Cai C, Shao Z, Guo R, Sun B, Jia C, Zhang L, Gigolashvili T, Wang Q (2015) Classic myrosinase-dependent degradation of indole glucosinolate attenuates fumonisin B1-induced programmed cell death in Arabidopsis. The Plant journal : for cell and molecular biology 81(6):920-933. [Abstract]
  • Weckopp SC & Kopriva S (2015) Are changes in sulfate assimilation pathway needed for evolution of C4 photosynthesis? Frontiers in plant science 5. [Abstract]
  • Mateos JL, Madrigal P, Tsuda K, Rawat V, Richter R, Romera-Branchat M, Fornara F, Schneeberger K, Krajewski P, Coupland G (2015) Combinatorial activities of SHORT VEGETATIVE PHASE and FLOWERING LOCUS C define distinct modes of flowering regulation in Arabidopsis. Genome biology 16:31. [Abstract]
  • Facchinelli F, Weber APM (2015) Analysis of Cyanophora paradoxa tells important lessons on plastid evolution. Perspectives in Phycology 2(1):3-10. [Abstract]
  • Jung B, Ludewig F, Schulz A, Meißner G, Wöstefeld N, Flügge U-I, Pommerrenig B, Wirsching P, Sauer N, Koch W, Sommer F, Mühlhaus T, Schroda M, Cuin TA, Graus D, Marten I, Hedrich R, & Neuhaus HE (2015) Identification of the transporter responsible for sucrose accumulation in sugar beet taproots. Nature Plants 1. [Abstract]
  • Kluth M, Stindt J, Dröge C, Linnemann D, Kubitz R, Schmitt L (2015) A Mutation within the Extended X Loop Abolished Substrate-induced ATPase Activity of the Human Liver ATP-binding Cassette (ABC) Transporter MDR3. Journal of Biological Chemistry 290(8):4896-4907. [Abstract]
  • Xue L, Cui H, Buer B, Vijayakumar V, Delaux P-M, Junkermann S, & Bucher M (2015) Network of GRAS Transcription Factors Involved in the Control of Arbuscule Development in Lotus japonicus. Plant physiology. [Abstract]
  • Kemen AC, Agler MT, Kemen E (2015) Host-microbe and microbe-microbe interactions in the evolution of obligate plant parasitism. The New phytologist. [Abstract]
  • Rast-Somssich MI, Broholm S, Jenkins H, Canales C, Vlad D, Kwantes M, Bilsborough G, Dello Ioio R, Ewing RM, Laufs P, Huijser P, Ohno C, Heisler MG, Hay A, Tsiantis M (2015) Alternate wiring of a KNOXI genetic network underlies differences in leaf development of A. thaliana and C. hirsuta. Genes & development 29(22):2391-2404.[Abstract]

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2014

  • Bohrer A-S, Kopriva S, & Takahashi H (2014) Plastid-cytosol partitioning and integration of metabolic pathways for APS/PAPS biosynthesis in Arabidopsis thaliana. Frontiers in plant science 5. [Abstract]
  • Hawkesford MJ, Kopriva S, De Kok LJ (Eds)(2014) Nutrient Use Efficiency in Plants, Concepts and Approaches. Plant Ecophysiology Series, Vol. 10, Springer [link]
  • Jain K, Krause K, Grewe F, Nelson GF, Weber AP, Christensen AC, & Mower JP (2014) Extreme features of the Galdieria sulphuraria organellar genomes: a consequence of polyextremophily? Genome biology and evolution. [Abstract]
  • Brumbarova T, Bauer P, & Ivanov R (2014) Molecular mechanisms governing Arabidopsis iron uptake. Trends in plant science. [Abstract]
  • Alcazar R, von Reth M, Bautor J, Chae E, Weigel D, Koornneef M, & Parker JE (2014) Analysis of a plant complex resistance gene locus underlying immune-related hybrid incompatibility and its occurrence in nature. PLoS genetics 10(12):e1004848. [Abstract]
  • Parker JE (2014) Co-opting the Cell-Cycle Machinery for Plant Immunity. Cell host & microbe 16(6):707-709. [Abstract]
  • Maier A & Hoecker U (2014) COP1/SPA ubiquitin ligase complexes repress anthocyanin accumulation under low light and high light conditions. Plant signaling & behavior:0. [Abstract]
  • Eisenhut M, Hocken N, & Weber AP (2014) Plastidial metabolite transporters integrate photorespiration with carbon, nitrogen, and sulfur metabolism. Cell calcium. [Abstract]
  • Balcerowicz M & Hoecker U (2014) Auxin – a novel regulator of stomata differentiation. Trends in plant science 19(12):747-749. [Abstract]
  • Bucher M, Hause B, Krajinski F, & Kuster H (2014) Through the doors of perception to function in arbuscular mycorrhizal symbioses. The New phytologist 204(4):833-840. [Abstract]
  • Calderwood A, Kopriva S, & Morris RJ (2014) Predictive Sulfur Metabolism – a field in flux. Frontiers in plant science 5. [Abstract]
  • Koprivova A & Kopriva S (2014) Molecular mechanisms of regulation of sulfate assimilation: first steps on a long road. Frontiers in plant science 5:589. [Abstract]
  • Frerigmann H & Gigolashvili T (2014) Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency. Frontiers in plant science 5. [Abstract]
  • Wittelsburger U, Pfeifer B, & Lercher MJ (2014) WhopGenome: high-speed access to whole-genome variation and sequence data in R. Bioinformatics.[Abstract]
  • Guttman D, McHardy AC, & Schulze-Lefert P (2014) Microbial genome-enabled insights into plant-microorganism interactions. Nature reviews. Genetics. [Abstract]
  • Pokhilko A, Flis A, Sulpice R, Stitt M, & Ebenhoh O (2014) Adjustment of carbon fluxes to light conditions regulates the daily turnover of starch in plants: a computational model. Molecular bioSystems 10(3):613-627. [Abstract]
  • Kulahoglu C, Denton AK, Sommer M, Mass J, Schliesky S, Wrobel TJ, Berckmans B, Gongora-Castillo E, Buell CR, Simon R, De Veylder L, Brautigam A, & Weber AP (2014) Comparative Transcriptome Atlases Reveal Altered Gene Expression Modules between Two Cleomaceae C3 and C4 Plant Species. The Plant cell 26(8):3243-3260. [Abstract]
  • Pankin A, Campoli C, Dong X, Kilian B, Sharma R, Himmelbach A, Saini R, Davis SJ, Stein N, Schneeberger K, & von Korff M (2014) Mapping-by-Sequencing Identifies HvPHYTOCHROME C as a Candidate Gene for the early maturity 5 Locus Modulating the Circadian Clock and Photoperiodic Flowering in Barley. Genetics. [Abstract]
  • Rishmawi L, Sun H, Schneeberger K, Hülskamp M, & Schrader A (2014) Rapid identification of a natural knockout allele of ARMADILLO REPEAT-CONTAINING KINESIN 1 that causes root hair branching by mapping-by-sequencing. Plant physiology. [Abstract]
  • Kaschner M, Loeschcke A, Krause J, Minh BQ, Heck A, Endres S, Svensson V, Wirtz A, von Haeseler A, Jaeger KE, Drepper T, & Krauss U (2014) Discovery of the first light-dependent protochlorophyllide oxidoreductase in anoxygenic phototrophic bacteria.Molecular microbiology 93(5):1066-1078.[Abstract]
  • Liebl W, Angelov A, Juergensen J, Chow J, Loeschcke A, Drepper T, Classen T, Pietruzska J, Ehrenreich A, Streit WR, & Jaeger KE (2014) Alternative hosts for functional (meta)genome analysis. Applied microbiology and biotechnology. [Abstract]
  • Pick TR & Weber APM (2014) Unknown components of the plastidial permeome. Frontiers in plant science 5. [Abstract]
  • Pallakies H & Simon R (2014) The CLE40 and CRN/CLV2 signaling pathways antagonistically control root meristem growth in Arabidopsis. Molecular plant. [Abstract]
  • Külahoglu C, Denton AK, Sommer M, Mass J, Schliesky S, Wrobel TJ, Berckmans B, Gongora-Castillo E, Buell CR, Simon R, De Veylder L, Bräutigam A, & Weber AP (2014) Comparative Transcriptome Atlases Reveal Altered Gene Expression Modules between Two Cleomaceae C3 and C4 Plant Species. The Plant cell.[Abstract]
  • Jansen RP, Niessing D, Baumann S, & Feldbrugge M (2014) mRNA transport meets membrane traffic. Trends in genetics : TIG.[Abstract]
  • Balcerowicz M, Ranjan A, Rupprecht L, Fiene G, & Hoecker U (2014) Auxin represses stomatal development in dark-grown seedlings via Aux/IAA proteins. Development 141(16):3165-3176. [Abstract]
  • Liu L, Adrian J, Pankin A, Hu J, Dong X, von Korff M, & Turck F (2014) Induced and natural variation of promoter length modulates the photoperiodic response of FLOWERING LOCUS T. Nature communications 5:4558. [Abstract]
  • Gigolashvili T & Kopriva S (2014) Transporters in plant sulfur metabolism. Frontiers in plant science 5. [Abstract]
  • Peter S, Zell MB, Blum C, Stuhl A, Elgass K, Sackrow M, Subramaniam V, Meixner AJ, Harter K, Maurino VG, & Schleifenbaum FE (2014) Photosynthesis in a different light: spectro-microscopy for in vivo characterization of chloroplasts. Frontiers in plant science 5:292. [Abstract]
  • Pfeifer B, Wittelsburger U, Ramos-Onsins SE, & Lercher MJ (2014) PopGenome: an efficient Swiss army knife for population genomic analyses in R. Molecular biology and evolution 31(7):1929-1936. [Abstract]
  • Andres F, Porri A, Torti S, Mateos J, Romera-Branchat M, Garcia-Martinez JL, Fornara F, Gregis V, Kater MM, & Coupland G (2014) SHORT VEGETATIVE PHASE reduces gibberellin biosynthesis at the Arabidopsis shoot apex to regulate the floral transition. Proceedings of the National Academy of Sciences of the United States of America 111(26):E2760-2769. [Abstract]
  • Castaings L, Bergonzi S, Albani MC, Kemi U, Savolainen O, & Coupland G (2014) Evolutionary conservation of cold-induced antisense RNAs of FLOWERING LOCUS C in Arabidopsis thaliana perennial relatives. Nature communications 5:4457. [Abstract]
  • Romera-Branchat M, Andres F, & Coupland G (2014) Flowering responses to seasonal cues: what’s new? Current opinion in plant biology 21C:120-127. [Abstract]
  • Frerigmann H, Berger B, & Gigolashvili T (2014) bHLH05 is an Interaction Partner of MYB51 and a Novel Regulator of Glucosinolate Biosynthesis in Arabidopsis. Plant physiology.[Abstract]
  • Ranjan A, Dickopf S, Ullrich KK, Rensing SA, & Hoecker U (2014) Functional analysis of COP1 and SPA orthologs from Physcomitrella and rice during photomorphogenesis of transgenic Arabidopsis reveals distinct evolutionary conservation. BMC plant biology 14:178. [Abstract]
  • Pankin A, Campoli C, Dong X, Kilian B, Sharma R, Himmelbach A, Saini R, Davis SJ, Stein N, Schneeberger K, & von Korff M (2014) Mapping-by-Sequencing Identifies HvPHYTOCHROME C as a Candidate Gene for the early maturity 5 Locus Modulating the Circadian Clock and Photoperiodic Flowering in Barley. Genetics. [Abstract]
  • Campoli C & von Korff M (2014) Chapter Five – Genetic Control of Reproductive Development in Temperate Cereals. Advances in Botanical Research, ed Fabio F (Academic Press), Vol Volume 72, pp 131-158. [Abstract]
  • Müller LM, Von Korff M, & Davis SJ (2014) Connections between circadian clocks and carbon metabolism reveal species-specific effects on growth control. Journal of experimental botany 65(11):2915-2923. [Abstract]
  • Zuccaro A, Lahrmann U, & Langen G (2014) Broad compatibility in fungal root symbioses. Current opinion in plant biology 20C:135-145. [Abstract]
  • Mallmann J, Heckmann D, Bräutigam A, Lercher MJ, Weber AP, Westhoff P, & Gowik U (2014) The role of photorespiration during the evolution of C4 photosynthesis in the genus Flaveria. eLife:e02478. [Abstract]
  • Wang Y, Brautigam A, Weber AP, & Zhu XG (2014) Three distinct biochemical subtypes of C4 photosynthesis? A modelling analysis. Journal of experimental botany 65(13):3567-3578. [Abstract]
  • Aldous SH, Weise SE, Sharkey TD, Waldera-Lupa DM, Stuhler K, Mallmann J, Groth G, Gowik U, Westhoff P, & Arsova B (2014) Evolution of the phosphoenolpyruvate carboxylase protein kinase family in C3 and C4 Flaveria species. Plant physiology.[Abstract]
  • Maurer F, Naranjo Arcos MA, & Bauer P (2014) Responses of a Triple Mutant Defective in Three Iron Deficiency-Induced BASIC HELIX-LOOP-HELIX Genes of the Subgroup Ib(2) to Iron Deficiency and Salicylic Acid. PloS one 9(6):e99234. [Abstract]
  • Xu HC, Grusdat M, Pandyra AA, Polz R, Huang J, Sharma P, Deenen R, Kohrer K, Rahbar R, Diefenbach A, Gibbert K, Lohning M, Hocker L, Waibler Z, Haussinger D, Mak TW, Ohashi PS, Lang KS, & Lang PA (2014) Type I Interferon Protects Antiviral CD8 T Cells from NK Cell Cytotoxicity. Immunity. [Abstract]
  • Staehr P, Lottgert T, Christmann A, Krueger S, Rosar C, Rolcik J, Novak O, Strnad M, Bell K, Weber AP, Flugge UI, & Hausler RE (2014) Reticulate leaves and stunted roots are independent phenotypes pointing at opposite roles of the phosphoenolpyruvate/phosphate translocator defective in cue1 in the plastids of both organs. Frontiers in plant science 5:126. [Abstract]
  • Sewelam N, Jaspert N, Van Der Kelen K, Tognetti VB, Schmitz J, Frerigmann H, Stahl E, Zeier J, Van Breusegem F, & Maurino VG (2014) Spatial H2O2 Signalling Specificity: H2O2 from Chloroplasts and Peroxisomes Modulates the Plant Transcriptome Differentially. Molecular plant. [Abstract]
  • Nomura Y, Izumi A, Fukunaga Y, Kusumi K, Iba K, Watanabe S, Nakahira Y, Weber AP, Nozawa A, & Tozawa Y (2014) Diversity in Guanosine 3’,5’-Bisdiphosphate (ppGpp) Sensitivity among Guanylate Kinases of Bacteria and Plants. The Journal of biological chemistry 289(22):15631-15641. [Abstract]
  • Pelletreau KN, Weber AP, Weber KL, & Rumpho ME (2014) Lipid Accumulation during the Establishment of Kleptoplasty in Elysia chlorotica. PloS one 9(5):e97477. [Abstract]
  • Bucher M, Hause B, Krajinski F, & Küster H (2014) Through the doors of perception to function in arbuscular mycorrhizal symbioses. New Phytologist:n/a-n/a.[Abstract]
  • Krajinski F, Courty PE, Sieh D, Franken P, Zhang H, Bucher M, Gerlach N, Kryvoruchko I, Zoeller D, Udvardi M, & Hause B (2014) The H+-ATPase HA1 of Medicago truncatula Is Essential for Phosphate Transport and Plant Growth during Arbuscular Mycorrhizal Symbiosis. The Plant cell 26(4):1808-1817. [Abstract]
  • Aubry S, Smith-Unna RD, Boursnell CM, Kopriva S, & Hibberd JM (2014) Transcript residency on ribosomes reveals a key role for the Arabidopsis thaliana bundle sheath in sulfur and glucosinolate metabolism. The Plant journal : for cell and molecular biology 78(4):659-673. [Abstract]
  • Hay AS, Pieper B, Cooke E, Mandakova T, Cartolano M, Tattersall AD, Ioio RD, McGowan SJ, Barkoulas M, Galinha C, Rast MI, Hofhuis H, Then C, Plieske J, Ganal M, Mott R, Martinez-Garcia JF, Carine MA, Scotland RW, Gan X, Filatov DA, Lysak MA, & Tsiantis M (2014) Cardamine hirsuta: a versatile genetic system for comparative studies. The Plant journal : for cell and molecular biology 78(1):1-15. [Abstract]
  • Mascher M, Gerlach N, Gahrtz M, Bucher M, Scholz U, & Dresselhaus T (2014) Sequence and ionomic analysis of divergent strains of maize inbred line b73 with an altered growth phenotype. PloS one 9(5):e96782.[Abstract]
  • Rishmawi L, Pesch M, Juengst C, Schauss AC, Schrader A, & Hulskamp M (2014) Non-cell-autonomous regulation of root hair patterning genes by WRKY75 in Arabidopsis. Plant physiology 165(1):186-195. [Abstract]
  • Blum A, Brumbarova T, Bauer P, & Ivanov R (2014) Hormone influence on the spatial regulation of expression in iron-deficient roots. Plant signaling & behavior 9(4). [Abstract]
  • Brouwer P, Bräutigam A, Kulahoglu C, Tazelaar AO, Kurz S, Nierop KG, van der Werf A, Weber AP, & Schluepmann H (2014) Azolla domestication towards a biobased economy? The New phytologist 202(3):1069-1082. [Abstract]
  • Paulus JK, Forster K, & Groth G (2014) Direct and selective small-molecule inhibition of photosynthetic PEP carboxylase: New approach to combat C weeds in arable crops. FEBS letters.[Abstract]
  • Bräutigam A, Schliesky S, Kulahoglu C, Osborne CP, & Weber AP (2014) Towards an integrative model of C4 photosynthetic subtypes: insights from comparative transcriptome analysis of NAD-ME, NADP-ME, and PEP-CK C4 species. Journal of experimental botany. doi:10.1093/jxb/eru100 [Abstract]
  • Calderwood A & Kopriva S (2014) Hydrogen sulfide in plants: From dissipation of excess sulfur to signaling molecule. Nitric oxide : biology and chemistry / official journal of the Nitric Oxide Society. doi:10.1016/j.niox.2014.02.005 [Abstract]
  • Engqvist MKM, Eßer C, Maier A, Lercher MJ, & Maurino VG (2014) Mitochondrial 2-hydroxyglutarate metabolism. Mitochondrion. dx.doi.org/10.1016/j.mito.2014.02.009. [Abstract]
  • Esser C, Kuhn A, Groth G, Lercher MJ, & Maurino VG (2014) Plant and Animal Glycolate Oxidases Have a Common Eukaryotic Ancestor and Convergently Duplicated to Evolve Long-Chain 2-Hydroxy Acid Oxidases. Molecular biology and evolution. [Abstract]
  • Žádníková P & Simon R (2014) How boundaries control plant development. Current opinion in plant biology 17(0):116-125. [Abstract]
  • Ivanov R, Brumbarova T, Blum A, Jantke AM, Fink-Straube C, & Bauer P (2014) SORTING NEXIN1 is required for modulating the trafficking and stability of the Arabidopsis IRON-REGULATED TRANSPORTER1. The Plant cell 26(3):1294-1307. [Abstract]
  • Lintala M, Schuck N, Thormahlen I, Jungfer A, Weber KL, Weber AP, Geigenberger P, Soll J, Bolter B, & Mulo P (2014) Arabidopsis tic62 trol mutant lacking thylakoid-bound ferredoxin-NADP+ oxidoreductase shows distinct metabolic phenotype. Molecular plant 7(1):45-57. [Abstract]
  • Bhide A, Schliesky S, Reich M, Weber AP, & Becker A (2014) Analysis of the floral transcriptome of Tarenaya hassleriana (Cleomaceae), a member of the sister group to the Brassicaceae: towards understanding the base of morphological diversity in Brassicales. BMC genomics 15:140. [Abstract]
  • Schlaeppi K, Dombrowski N, Oter RG, Ver Loren van Themaat E, & Schulze-Lefert P (2014) Quantitative divergence of the bacterial root microbiota in Arabidopsis thaliana relatives. Proceedings of the National Academy of Sciences of the United States of America 111(2):585-592. [Abstract]
  • Lundquist PK, Rosar C, Brautigam A, & Weber AP (2014) Plastid signals and the bundle sheath: mesophyll development in reticulate mutants. Molecular plant 7(1):14-29. [Abstract]
  • Habte E, Müller LM, Shtaya M, Davis SJ, & Von Korff M (2014) Osmotic stress at the barley root affects expression of circadian clock genes in the shoot. Plant, cell & environment doi:10.1111/pce.12242 [Abstract]
  • Vlad D, Kierzkowski D, Rast MI, Vuolo F, Dello Ioio R, Galinha C, Gan X, Hajheidari M, Hay A, Smith RS, Huijser P, Bailey CD, & Tsiantis M (2014) Leaf shape evolution through duplication, regulatory diversification, and loss of a homeobox gene. Science 343(6172):780-783. [Abstract]
  • Frerigmann H & Gigolashvili T (2014) MYB34, MYB51 and MYB122 Distinctly Regulate Indolic Glucosinolate Biosynthesis in Arabidopsis thaliana. Molecular plant 10.1093/mp/ssu004. [Abstract]
  • Schönknecht G, Weber AP, & Lercher MJ (2014) Horizontal gene acquisitions by eukaryotes as drivers of adaptive evolution. BioEssays : news and reviews in molecular, cellular and developmental biology 36(1):9-20. [Abstract]
  • Christian N, Skupin A, Morante S, Jansen K, Rossi G, & Ebenhöh O (2014) Mesoscopic behavior from microscopic Markov dynamics and its application to calcium release channels. Journal of theoretical biology 343:102-112. [Abstract]
  • Baumann S, Konig J, Koepke J, & Feldbrügge M (2014) Endosomal transport of septin mRNA and protein indicates local translation on endosomes and is required for correct septin filamentation. EMBO Rep 15(1):94-102. [Abstract]
  • Terfrüchte M, Joehnk B, Fajardo-Somera R, Braus GH, Riquelme M, Schipper K, & Feldbrügge M (2014) Establishing a versatile Golden Gate cloning system for genetic engineering in fungi. Fungal Genetics and Biology 62(0):1-10. [Abstract]

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2013

  • Willmann M, Gerlach N, Buer B, Polatajko A, Nagy R, Koebke E, Jansa J, Flisch R, & Bucher M (2013) Mycorrhizal phosphate uptake pathway in maize: vital for growth and cob development on nutrient poor agricultural and greenhouse soils. Frontiers in plant science 4:533. [Abstract]
  • Weber AP & Bräutigam A (2013) The role of membrane transport in metabolic engineering of plant primary metabolism. Current opinion in biotechnology 24(2):256-262. [Abstract]
  • Weber AP & Bauwe H (2013) Photorespiration—a driver for evolutionary innovations and key to better crops. Plant biology 15(4):621-623. [Abstract]
  • Vogel-Adghough D, Stahl E, Navarova H, & Zeier J (2013) Pipecolic acid enhances resistance to bacterial infection and primes salicylic acid and nicotine accumulation in tobacco. Plant signaling & behavior 8(11). [Abstract]
  • Stahl Y, Grabowski S, Bleckmann A, Kuhnemuth R, Weidtkamp-Peters S, Pinto KG, Kirschner GK, Schmid JB, Wink RH, Hulsewede A, Felekyan S, Seidel CA, & Simon R (2013) Moderation of Arabidopsis root stemness by CLAVATA1 and ARABIDOPSIS CRINKLY4 receptor kinase complexes. Current biology : CB 23(5):362-371. [Abstract]
  • Schulze S, Mallmann J, Burscheidt J, Koczor M, Streubel M, Bauwe H, Gowik U, & Westhoff P (2013) Evolution of C4 photosynthesis in the genus flaveria: establishment of a photorespiratory CO2 pump. The Plant cell 25(7):2522-2535. [Abstract]
  • Schönknecht G, Chen WH, Ternes CM, Barbier GG, Shrestha RP, Stanke M, Bräutigam A, Baker BJ, Banfield JF, Garavito RM, Carr K, Wilkerson C, Rensing SA, Gagneul D, Dickenson NE, Oesterhelt C, Lercher MJ, & Weber AP (2013) Gene transfer from bacteria and archaea facilitated evolution of an extremophilic eukaryote. Science 339(6124):1207-1210. [Abstract]
  • Schlieper D, Forster K, Paulus JK, & Groth G (2013) Resolving the Activation Site of Positive Regulators in Plant Phosphoenolpyruvate Carboxylase. Molecular plant. [Abstract]
  • Qiu H, Price DC, Weber AP, Facchinelli F, Yoon HS, & Bhattacharya D (2013) Assessing the bacterial contribution to the plastid proteome. Trends in plant science 18(12):680-687. [Abstract]
  • Pick TR, Bräutigam A, Schulz MA, Obata T, Fernie AR, & Weber AP (2013) PLGG1, a plastidic glycolate glycerate transporter, is required for photorespiration and defines a unique class of metabolite transporters. Proceedings of the National Academy of Sciences of the United States of America 110(8):3185-3190. [Abstract]
  • Paulus JK, Schlieper D, & Groth G (2013) Greater efficiency of photosynthetic carbon fixation due to single amino-acid substitution. Nature communications 4:1518. [Abstract]
  • Paulus JK, Niehus C, & Groth G (2013) Evolution of c4 phosphoenolpyruvate carboxylase: enhanced feedback inhibitor tolerance is determined by a single residue. Molecular plant 6(6):1996-1999. [Abstract]
  • Maurino VG & Weber AP (2013) Engineering photosynthesis in plants and synthetic microorganisms. Journal of experimental botany 64(3):743-751. [Abstract]
  • Maier A, Schrader A, Kokkelink L, Falke C, Welter B, Iniesto E, Rubio V, Uhrig JF, Hülskamp M, & Hoecker U (2013) Light and the E3 ubiquitin ligase COP1/SPA control the protein stability of the MYB transcription factors PAP1 and PAP2 involved in anthocyanin accumulation in Arabidopsis. The Plant journal : for cell and molecular biology 74(4):638-651. [Abstract]
  • Lota F, Wegmuller S, Buer B, Sato S, Bräutigam A, Hanf B, & Bucher M (2013) The cis-acting CTTC-P1BS module is indicative for gene function of LjVTI12, a Qb-SNARE protein gene that is required for arbuscule formation in Lotus japonicus. The Plant journal : for cell and molecular biology 74(2):280-293. [Abstract]
  • Kuhn A, Engqvist MK, Jansen EE, Weber AP, Jakobs C, & Maurino VG (2013) D-2-hydroxyglutarate metabolism is linked to photorespiration in the shm1-1 mutant. Plant biology 15(4):776-784. [Abstract]
  • Kern R, Eisenhut M, Bauwe H, Weber AP, & Hagemann M (2013) Does the Cyanophora paradoxa genome revise our view on the evolution of photorespiratory enzymes? Plant biology 15(4):759-768. [Abstract]
  • Heckmann D, Schulze S, Denton A, Gowik U, Westhoff P, Weber AP, & Lercher MJ (2013) Predicting C4 photosynthesis evolution: modular, individually adaptive steps on a Mount Fuji fitness landscape. Cell 153(7):1579-1588. [Abstract]
  • Hagemann M, Fernie AR, Espie GS, Kern R, Eisenhut M, Reumann S, Bauwe H, & Weber AP (2013) Evolution of the biochemistry of the photorespiratory C2 cycle. Plant biology 15(4):639-647. [Abstract]
  • Göhre V, Haag C, & Feldbrügge M (2013) RNA biology in fungal phytopathogens. PLoS pathogens 9(10):e1003617. [Abstract]
  • Fernie AR, Bauwe H, Eisenhut M, Florian A, Hanson DT, Hagemann M, Keech O, Mielewczik M, Nikoloski Z, Peterhansel C, Roje S, Sage R, Timm S, von Cammerer S, Weber AP, & Westhoff P (2013) Perspectives on plant photorespiratory metabolism. Plant biology 15(4):748-753. [Abstract]
  • Facchinelli F, Pribil M, Oster U, Ebert NJ, Bhattacharya D, Leister D, & Weber AP (2013) Proteomic analysis of the Cyanophora paradoxa muroplast provides clues on early events in plastid endosymbiosis. Planta 237(2):637-651. [Abstract]
  • Facchinelli F, Colleoni C, Ball SG, & Weber AP (2013) Chlamydia, cyanobiont, or host: who was on top in the menage a trois? Trends in plant science 18(12):673-679. [Abstract]
  • Eisenhut M, Pick TR, Bordych C, & Weber AP (2013) Towards closing the remaining gaps in photorespiration—the essential but unexplored role of transport proteins. Plant biology 15(4):676-685. [Abstract]
  • Denton AK, Simon R, & Weber AP (2013) C(4) photosynthesis: from evolutionary analyses to strategies for synthetic reconstruction of the trait. Current opinion in plant biology 16(3):315-321. [Abstract]
  • Cheng S, van den Bergh E, Zeng P, Zhong X, Xu J, Liu X, Hofberger J, de Bruijn S, Bhide AS, Kuelahoglu C, Bian C, Chen J, Fan G, Kaufmann K, Hall JC, Becker A, Brautigam A, Weber AP, Shi C, Zheng Z, Li W, Lv M, Tao Y, Wang J, Zou H, Quan Z, Hibberd JM, Zhang G, Zhu XG, Xu X, & Schranz ME (2013) The Tarenaya hassleriana genome provides insight into reproductive trait and genome evolution of crucifers. The Plant cell 25(8):2813-2830. [Abstract]
  • Bordych C, Eisenhut M, Pick TR, Kuelahoglu C, & Weber AP (2013) Co-expression analysis as tool for the discovery of transport proteins in photorespiration. Plant biology 15(4):686-693. [Abstract]
  • Bhattacharya D, Price DC, Chan CX, Qiu H, Rose N, Ball S, Weber AP, Arias MC, Henrissat B, Coutinho PM, Krishnan A, Zauner S, Morath S, Hilliou F, Egizi A, Perrineau MM, & Yoon HS (2013) Genome of the red alga Porphyridium purpureum. Nature communications 4:1941. [Abstract]

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2012

  • Schliesky S, Gowik U, Weber AP, & Bräutigam A (2012) RNA-Seq Assembly – Are We There Yet? Frontiers in plant science 3:220. [Abstract]
  • Rolauffs S, Fackendahl P, Sahm J, Fiene G, & Hoecker U (2012) Arabidopsis COP1 and SPA genes are essential for plant elongation but not for acceleration of flowering time in response to a low red light to far-red light ratio. Plant physiology 160(4):2015-2027.[Abstract]
  • Göhre V, Vollmeister E, Bolker M, & Feldbrügge M (2012) Microtubule-dependent membrane dynamics in Ustilago maydis: Trafficking and function of Rab5a-positive endosomes. Communicative & integrative biology 5(5):485-490. [Abstract]
  • Gigolashvili T, Geier M, Ashykhmina N, Frerigmann H, Wulfert S, Krueger S, Mugford SG, Kopriva S, Haferkamp I, & Flugge UI (2012) The Arabidopsis thylakoid ADP/ATP carrier TAAC has an additional role in supplying plastidic phosphoadenosine 5’-phosphosulfate to the cytosol. The Plant cell 24(10):4187-4204. [Abstract]
  • Facchinelli F, Bräutigam A, & Weber AP (2012) Metabolic integration of the chloroplast during endosymbiosis. Endocytobiosis Cell Res 23:52-55. [Abstract]
  • Bräutigam A, Facchinelli F, & Weber AP (2012) Metabolic integration of the chloroplast during endosymbiosis – molecular characterization of envelope transport proteins. Endocytobiosis Cell Res 23:96-102. [Abstract]

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