Publications

2017

  • Moejes FM, Matuszyńska A, Adhikari K, Bassi R, Cariti F, Cogne G, Dikaios I, Falciatore A, Finazzi G, Flori S, Goldschmidt-Clermont M, Magni S, Maguire J, Le Monnier A, Müller K, Poolman M, Singh D, Spelberg S, Stella GM, Succurro A, Taddei L, Urbain B, Villanova V, Zabke C, Ebenhöh O (2017) A systems-wide understanding of photosynthetic acclimation in algae and higher plants, J Exp Bot. May 17;68(11):2667-2681. doi: 10.1093/jxb/erx137.
  • Kruse J, Doehlemann G, Kemen E, Thines M (2017) Asexual and sexual morphs of Moesziomyces revisited. IMA Fungus. Jun;8(1):117-129. doi: 10.5598/imafungus.2017.08.01.09. [Abstract]
  • Engqvist MKM, Maurino VG (2017) Metabolic Engineering of Photorespiration. Methods Mol Biol. 1653:137-155. doi: 10.1007/978-1-4939-7225-8_10. [Abstract]
  • Roell MS, Kuhnert F, Zamani-Nour S, Weber APM (2017) In Vitro Analysis of Metabolite Transport Proteins. Methods Mol Biol. 1653:83-96. doi: 10.1007/978-1-4939-7225-8_6. [Abstract]
  • Kirschner GK, Stahl Y, Von Korff M, Simon R (2017) Unique and Conserved Features of the Barley Root Meristem. Front Plant Sci. 21;8:1240. doi: 10.3389/fpls.2017.01240. [Abstract]
  • Long Y, Stahl Y, Weidtkamp-Peters S, Postma M, Zhou W, Goedhart J, Sanchez-Perez MI, Gadella TWJ, Simon R, Scheres B, Blilou I (2017) In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots. Nature. doi: 10.1038/nature23317 [Abstract]
  • Minges A, Groth G (2017) Small-molecule inhibition of pyruvate phosphate dikinase targeting the nucleotide binding site. PLoS One 12(7):e0181139. [Abstract]
  • Moejes FW, Matuszyńska A, Adhikari K, Bassi R, Cariti F, Cogne G, Dikaios I, Falciatore A, Finazzi G, Flori S, Goldschmidt-Clermont M, Magni S, Maguire J, Le Monnier A, Müller K, Poolman M, Singh D, Spelberg S, Stella GR, Succurro A, Taddei L, Urbain B, Villanova V, Zabke C, Ebenhöh O (2017) A systems-wide understanding of photosynthetic acclimation in algae and higher plants. J Exp Bot 68(11):2667-2681. [Abstract]
  • Rademacher N, Wrobel TJ, Rossoni AW, Kurz S, Bräutigam A, Weber APM, Eisenhut M (2017) Transcriptional response of the extremophile red alga Cyanidioschyzon merolae to changes in CO2 concentrations. J Plant Physiol. doi: 10.1016/j.jplph.2017.06.014 [Abstract]
  • Schmelling NM, Lehmann R, Chaudhury P, Beck C, Albers SV, Axmann IM, Wiegard A (2017) Minimal tool set for a prokaryotic circadian clock. BMC Evol Biol 17(1):169. [Abstract]
  • van Esse GW, Walla A, Finke A, Koornneef M, Pecinka A, von Korff M (2017) Six-rowed spike 3 (VRS3) is a histone demethylase that controls lateral spikelet development in barley. Plant Physiol. doi: 10.1104/pp.17.00108 [Abstract]
  • Winkler M, Niemeyer M, Hellmuth A, Janitza P, Christ G, Samodelov SL, Wilde V, Majovsky P, Trujillo M, Zurbriggen MD, Hoehenwarter W, Quint M, Calderon Villalobos LIA (2017) Variation in auxin sensing guides AUX/IAA transcriptional repressor ubiquitylation and destruction. Nat Commun 8:15706. [Abstract]
  • Samodelov SL, Zurbriggen MD (2017) Quantitatively Understanding Plant Signaling: Novel Theoretical-Experimental Approaches. Trends Plant Sci. doi: 10.1016/j.tplants.2017.05.006. [Abstract]
  • Redkar A, Matei A, Doehlemann G (2017) Insights into Host Cell Modulation and Induction of New Cells by the Corn Smut Ustilago maydis. Front Plant Sci 8:899. [Abstract]
  • Raguin A, Ebenhöh O (2017) Design starch: stochastic modeling of starch granule biogenesis. Biochem Soc Trans. doi: 10.1042/BST20160407 [Abstract]
  • Münch PC, Stecher B, McHardy AC (2017) EDEN: Evolutionary Dynamics within Environments. Bioinformatics. doi: 10.1093/bioinformatics/btx394 [Abstract]
  • Hacquard S, Spaepen S, Garrido-Oter R, Schulze-Lefert P (2017) Interplay Between Innate Immunity and the Plant Microbiota. Annu Rev Phytopathol. doi: 10.1146/annurev-phyto-080516-035623
  • Dumack K, Flues S, Hermanns K, Bonkowski M (2017) Rhogostomidae (Cercozoa) from soils, roots and plant leaves (Arabidopsis thaliana): Description of Rhogostoma epiphylla sp. nov. and R. cylindrica sp. nov. Eur J Protistol 60:76-86. [Abstract]
  • Balcerowicz M, Kerner K, Schenkel C, Hoecker U (2017) SPA Proteins Affect the Subcellular Localization of COP1 in the COP1/SPA Ubiquitin Ligase Complex during Photomorphogenesis. Plant Physiol 174(3):1314-1321. [Abstract]
  • Wawra S, Trusch F, Matena A, Apostolakis K, Linne U, Zhukov I, Stanek J, Kozminski W, Davidson I, Secombes CJ, Bayer P, van West P (2017) The RxLR Motif of the Host Targeting Effector AVR3a of Phytophthora infestans Is Cleaved before Secretion. Plant Cell 29(6):1184-1195. [Abstract]
  • Terfrüchte M, Reindl M, Jankowski S, Sarkari P, Feldbrügge M, Schipper K (2017) Applying Unconventional Secretion in Ustilago maydis for the Export of Functional Nanobodies. Int J Mol Sci 18(5). [Abstract]
  • Succurro A, Moejes FW, Ebenhöh O (2017) A diverse community to study communities: integration of experiments and mathematical models to study microbial consortia. J Bacteriol. doi: 10.1128/JB.00865-16 [Abstract]https://www.ncbi.nlm.nih.gov/pubmed/27734096
  • Gol L, Tomé F, von Korff M (2017) Floral transitions in wheat and barley: interactions between photoperiod, abiotic stresses, and nutrient status. J Exp Bot. doi: 10.1093/jxb/erx055 [Abstract]
  • Hartmann M, Kim D, Bernsdorff F, Ajami-Rashidi Z, Scholten N, Schreiber S, Zeier T, Schuck S, Reichel-Deland V, Zeier J (2017) Biochemical Principles and Functional Aspects of Pipecolic Acid Biosynthesis in Plant Immunity. Plant Physiol 174(1):124-153. [Abstract]
  • Rast-Somssich MI, Zadnikova P, Schmid S, Kieffer M, Kepinski S, Simon R (2017) The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J Exp Bot. doi: 10.1093/jxb/erx131 [Abstract]
  • Minges A, Höppner A, Groth G (2017) Trapped Intermediate State of Plant Pyruvate Phosphate Dikinase Indicates Sub-steps in Catalytic Swiveling Domain Mechanism. Protein Sci. doi:10.1002/pro.3184 [Abstract]
  • Heckmann D, Schlüter U, Weber APM (2017) Machine learning techniques for predicting crop photosynthetic capacity from leaf reflectance spectra. Mol Plant. doi: 10.1016/j.molp.2017.04.009 [Abstract]
  • Somssich M, Simon R (2017) Studying Protein-Protein Interactions In Planta Using Advanced Fluorescence Microscopy. Methods Mol Biol 1610:267-285. [Abstract]
  • Hoecker U (2017) The activities of the E3 ubiquitin ligase COP1/SPA, a key repressor in light signaling. Curr Opin Plant Biol 37:63-69. [Abstract]
  • Tomé F, Jansseune K, Saey B, Grundy J, Vandenbroucke K, Hannah MA, Redestig H (2017) rosettR: protocol and software for seedling area and growth analysis. Plant Methods 13(1):13. [Abstract]
  • Minges A, Ciupka D, Winkler C, Hoppner A, Gohlke H, Groth G (2017) Structural intermediates and directionality of the swiveling motion of Pyruvate Phosphate Dikinase. Sci Rep 7:45389. [Abstract]
  • Hielscher B, Charton L, Mettler-Altmann T, Linka N (2017) Analysis of Peroxisomal beta-Oxidation During Storage Oil Mobilization in Arabidopsis thaliana Seedlings. Methods Mol Biol 1595:291-304. [Abstract]
  • Haag C, Pohlmann T, Feldbrügge M (2017) The ESCRT regulator Did2 maintains the balance between long-distance endosomal transport and endocytic trafficking. PLoS Genet 13(4):e1006734. [Abstract]
  • de Vries J, de Vries S, Slamovits CH, Rose LE, Archibald JM (2017) How Embryophytic is the Biosynthesis of Phenylpropanoids and their Derivatives in Streptophyte Algae? Plant Cell Physiol. doi: 10.1093/pcp/pcx037 [Abstract]
  • Cardenas-Monroy CA, Pohlmann T, Pinon-Zarate G, Matus-Ortega G, Guerra G, Feldbrügge M, Pardo JP (2017) The mitochondrial alternative oxidase Aox1 is needed to cope with respiratory stress but dispensable for pathogenic development in Ustilago maydis. PLoS One 12(3):e0173389. [Abstract]
  • Brouwer P, Bräutigam A, Buijs VA, Tazelaar AO, van der Werf A, Schlüter U, Reichart GJ, Bolger A, Usadel B, Weber AP, Schluepmann H (2017) Metabolic Adaptation, a Specialized Leaf Organ Structure and Vascular Responses to Diurnal N2 Fixation by Nostoc azollae Sustain the Astonishing Productivity of Azolla Ferns without Nitrogen Fertilizer. Front Plant Sci 8:442. [Abstract]
  • Snijder J, Schuller JM, Wiegard A, Lossl P, Schmelling N, Axmann IM, Plitzko JM, Forster F, Heck AJ (2017) Structures of the cyanobacterial circadian oscillator frozen in a fully assembled state. Science 355(6330):1181-1184. [Abstract]
  • Vollmer C, Weber APM, Wallenfang M, Hoffmann T, Mettler-Altmann T, Truse R, Bauer I, Picker O, Mathes AM (2017) Melatonin pretreatment improves gastric mucosal blood flow and maintains intestinal barrier function during hemorrhagic shock in dogs. Microcirculation doi: 10.1111/micc.12345 [Abstract]
  • Templer SE, Ammon A, Pscheidt D, Ciobotea O, Schuy C, McCollum C, Sonnewald U, Hanemann A, Forster J, Ordon F, von Korff M, Voll LM (2017) Metabolite profiling of barley flag leaves under drought and combined heat and drought stress reveals metabolic QTLs for metabolites associated with antioxidant defense. J Exp Bot. doi: 10.1093/jxb/erx038 [Abstract]
  • Arthaut LD, Jourdan N, Mteyrek A, Procopio M, El-Esawi M, d'Harlingue A, Bouchet PE, Witczak J, Ritz T, Klarsfeld A, Birman S, Usselman RJ, Hoecker U, Martino CF, Ahmad M (2017) Blue-light induced accumulation of reactive oxygen species is a consequence of the Drosophila cryptochrome photocycle. PLoS One 12(3):e0171836. [Abstract]
  • Frantzeskakis L, Courville KJ, Pluecker L, Kellner R, Kruse J, Brachmann A, Feldbrügge M, Göhre V (2017) The plant-dependent life cycle of Thecaphora thlaspeos: a smut fungus adapted to Brassicaceae. Molecular Plant-Microbe Interactions.doi: 10.1094/MPMI-08-16-0164-R [Abstract]
  • Kiefer C, Severing E, Karl R, Bergonzi S, Koch M, Tresch A, Coupland G (2017) Divergence of annual and perennial species in the Brassicaceae and the contribution of cis-acting variation at FLC orthologues. Molecular ecology:doi 10.1111/mec.14084 [Abstract]
  • Schmitz J, Srikanth NV, Hudig M, Poschmann G, Lercher MJ, Maurino VG (2017) The ancestors of diatoms evolved a unique mitochondrial dehydrogenase to oxidize photorespiratory glycolate. Photosynth Res.doi: 10.1007/s11120-017-0355-1 [Abstract]
  • Runions A, Tsiantis M, Prusinkiewicz P (2017) A common developmental program can produce diverse leaf shapes. New Phytologist: doi: 10.1111/nph.14449 [Abstract]
  • Rishmawi L, Bühler J, Jaegle B, Hülskamp M, Koornneef M (2017) Quantitative trait loci controlling leaf venation in Arabidopsis. Plant, cell & environment. [Abstract]
  • Cenci U, Bhattacharya D, Weber AP, Colleoni C, Subtil A, Ball SG (2017) Biotic Host-Pathogen Interactions As Major Drivers of Plastid Endosymbiosis. Trends in plant science. doi: 10.1016/j.tplants.2016.12.007 [Abstract]
  • Badia MB, Mans R, Lis AV, Tronconi MA, Arias CL, Maurino VG, Andreo CS, Drincovich MF, van Maris AJ, Gerrard Wheeler MC (2017) Specific Arabidopsis thaliana malic enzyme isoforms can provide anaplerotic pyruvate carboxylation function in Saccharomyces cerevisiae. FEBS J 284(4):654-665. [Abstract]
  • Beddow J, Stolpe B, Cole PA, Lead JR, Sapp M, Lyons BP, Colbeck I, Whitby C (2017) Nanosilver inhibits nitrification and reduces ammonia-oxidising bacterial but not archaeal amoA gene abundance in estuarine sediments. Environ Microbiol 19(2):500-510. [Abstract]
  • Flores-Tornero M, Anoman AD, Rosa-Tellez S, Toujani W, Weber AP, Eisenhut M, Kurz S, Alseekh S, Fernie AR, Munoz-Bertomeu J, Ros R (2017) Overexpression of the triose phosphate translocator (TPT) complements the abnormal metabolism and development of plastidial glycolytic glyceraldehyde-3-phosphate dehydrogenase mutants. The Plant journal : for cell and molecular biology 89(6):1146-1158. [Abstract]
  • Doehlemann G, Ökmen B, Zhu W, Sharon A (2017) Plant Pathogenic Fungi. Microbiol Spectr 5(1). [Abstract]
  • de Vries S, von Dahlen JK, Uhlmann C, Schnake A, Kloesges T, Rose LE (2017) Signatures of selection and host-adapted gene expression of the Phytophthora infestans RNA silencing suppressor PSR2. Molecular plant pathology 18(1):110-124. [Abstract]
  • Denton AK, Mass J, Külahoglu C, Lercher MJ, Bräutigam A, Weber AP (2017) Freeze-quenched maize mesophyll and bundle sheath separation uncovers bias in previous tissue-specific RNA-Seq data. Journal of experimental botany 68(2):147-160. [Abstract]
  • Monniaux M, McKim SM, Cartolano M, Thévenon E, Parcy F, Tsiantis M, Hay A (2017) Conservation vs divergence in LEAFY and APETALA1 functions between Arabidopsis thaliana and Cardamine hirsuta. New Phytologist: doi: 10.1111/nph.14419 [Abstract]
  • Nieberl P, Ehrl C, Pommerrenig B, Graus D, Marten I, Jung B, Ludewig F, Koch W, Harms K, Flügge UI, Neuhaus HE, Hedrich R, Sauer N (2017) Functional characterisation and cell specificity of BvSUT1, the transporter that loads sucrose into the phloem of sugar beet (Beta vulgaris L.) source leaves. Plant biology. [Abstract]
  • Eisenhut M, Bräutigam A, Timm S, Florian A, Tohge T, Fernie AR, Bauwe H, Weber AP (2017) Photorespiration Is Crucial for Dynamic Response of Photosynthetic Metabolism and Stomatal Movement to Altered CO2 Availability. Molecular plant 10(1):47-61. [Abstract]
  • Ejaz M, von Korff M (2017) The Genetic Control of Reproductive Development under High Ambient Temperature. Plant physiology 173(1):294-306. [Abstract]
  • Jung C, Pillen K, Staiger D, Coupland G, von Korff M (2017) Editorial: Recent Advances in Flowering Time Control. Frontiers in plant science 7(2011). [Abstract]
  • Pankin A, von Korff M (2017) Co-evolution of methods and thoughts in cereal domestication studies: a tale of barley (Hordeum vulgare). Current opinion in plant biology 36:15-21. [Abstract]
  • Schlüter U, Bräutigam A, Gowik U, Melzer M, Christin PA, Kurz S, Mettler-Altmann T, Weber AP (2017) Photosynthesis in C3-C4 intermediate Moricandia species. Journal of experimental botany 68(2):191-206. [Abstract]
  • Pokhilko A, Zhao J, Stark WM, Colloms SD, Ebenhöh O (2017) A simplified mathematical model of directional DNA site-specific recombination by serine integrases. Journal of the Royal Society, Interface / the Royal Society 14(126). [Abstract]
  • Katzke N, Knapp A, Loeschcke A, Drepper T, Jaeger KE (2017) Novel Tools for the Functional Expression of Metagenomic DNA. Methods in molecular biology 1539:159-196. [Abstract]
  • Lauterbach M, Billakurthi K, Kadereit G, Ludwig M, Westhoff P, Gowik U (2017) C3 cotyledons are followed by C4 leaves: intra-individual transcriptome analysis of Salsola soda (Chenopodiaceae). J Exp Bot 68(2):161-176. [Abstract]
  • Liller CB, Walla A, Boer MP, Hedley P, Macaulay M, Effgen S, von Korff M, van Esse GW, Koornneef M (2017) Fine mapping of a major QTL for awn length in barley using a multiparent mapping population. Theor Appl Genet 130(2):269-281. [Abstract]
  • Dombrowski N, Schlaeppi K, Agler MT, Hacquard S, Kemen E, Garrido-Oter R, Wunder J, Coupland G, Schulze-Lefert P (2017) Root microbiota dynamics of perennial Arabis alpina are dependent on soil residence time but independent of flowering time. ISME J 11(1):43-55. [Abstract]
  • Lundquist PK, Mantegazza O, Stefanski A, Stühler K, Weber AP (2017) Surveying the Oligomeric State of Arabidopsis thaliana Chloroplasts. Mol Plant 10(1):197-211. [Abstract]
  • Nakano RT, Pislewska-Bednarek M, Yamada K, Edger PP, Miyahara M, Kondo M, Bottcher C, Mori M, Nishimura M, Schulze-Lefert P, Hara-Nishimura I, Bednarek P (2017) PYK10 myrosinase reveals a functional coordination between endoplasmic reticulum bodies and glucosinolates in Arabidopsis thaliana. Plant J 89(2):204-220. [Abstract]
  • Li Y, Heckmann D, Lercher MJ, Maurino VG (2017) Combining genetic and evolutionary engineering to establish C4 metabolism in C3 plants. J Exp Bot 68(2):117-125. [Abstract]

2016

  • Hussner A, Mettler-Altmann T, Weber APM, Sand-Jensen K (2016) Acclimation of photosynthesis to supersaturated CO2 in aquatic plant bicarbonate users. Freshwater Biology 61(10):1720-1732. [Abstract]
  • Sadowsky A, Mettler-Altmann T, Ott S (2016) Metabolic response to desiccation stress in strains of green algal photobionts (Trebouxia) from two Antarctic lichens of southern habitats. Phycologia 55(6):703-714. [Abstract]
  • Ploch S, Rose LE, Bass D, Bonkowski M (2016) High Diversity Revealed in Leaf-Associated Protists (Rhizaria: Cercozoa) of Brassicaceae. J Eukaryot Microbiol 63(5):635-641. [Abstract]
  • Heidel AJ, Kiefer C, Coupland G, Rose LE (2016) Pinpointing genes underlying annual/perennial transitions with comparative genomics. BMC genomics 17(1):921. [Abstract]
  • Samodelov SL, Beyer HM, Guo X, Augustin M, Jia K-P, Baz L, Ebenhöh O, Beyer P, Weber W, Al-Babili S, Zurbriggen MD (2016) StrigoQuant: A genetically encoded biosensor for quantifying strigolactone activity and specificity. Science Advances 2(11). [Abstract]
  • Advances in Botanical Research (2016) ed Stanislav K (Academic Press), Vol Volume 80. [Abstract]
  • Drincovich MF, Voll LM, Maurino VG (2016) Editorial: On the Diversity of Roles of Organic Acids. Frontiers in plant science 7(1592). [Abstract]
  • Christopher A, Hameister H, Corrigall H, Ebenhöh O, Müller B, Ullner E (2016) Modelling Robust Feedback Control Mechanisms That Ensure Reliable Coordination of Histone Gene Expression with DNA Replication. PloS one 11(10):e0165848. [Abstract]
  • Wawra S, Fesel P, Widmer H, Timm M, Seibel J, Leson L, Kesseler L, Nostadt R, Hilbert M, Langen G, Zuccaro A (2016) The fungal-specific β-glucan-binding lectin FGB1 alters cell-wall composition and suppresses glucan-triggered immunity in plants. Nature communications 7:13188. [Abstract]
  • Bösch, K., Frantzeskakis, L., Vraneš, M., Kämper, J., Schipper, K., Göhre, V. Genetic Manipulation of the Plant Pathogen Ustilago maydis to Study Fungal Biology and Plant Microbe Interactions. J. Vis. Exp. (115), e54522, doi:10.3791/54522 (2016). [Abstract]
  • Mai HJ, Pateyron S, Bauer P (2016) Iron homeostasis in Arabidopsis thaliana: transcriptomic analyses reveal novel FIT-regulated genes, iron deficiency marker genes and functional gene networks. BMC plant biology 16[Abstract]
  • Matuszyńska A, Heidari S, Jahns P, Ebenhöh O (2016) A mathematical model of non-photochemical quenching to study short-term light memory in plants. Biochimica et biophysica acta 1857(12):1860-1869. [Abstract]
  • Huang XY, Chao DY, Koprivova A, Danku J, Wirtz M, Müller S, Sandoval FJ, Bauwe H, Roje S, Dilkes B, Hell R, Kopriva S, Salt DE (2016) Nuclear Localised MORE SULPHUR ACCUMULATION1 Epigenetically Regulates Sulphur Homeostasis in Arabidopsis thaliana. PLoS genetics 12(9):e1006298. [Abstract]
  • Jaegle B, Uroic MK, Holtkotte X, Lucas C, Termath AO, Schmalz HG, Bucher M, Hoecker U, Hülskamp M, Schrader A (2016) A fast and simple LC-MS-based characterization of the flavonoid biosynthesis pathway for few seed(ling)s. BMC plant biology 16(1):190. [Abstract]
  • Koprivova A, Kopriva S (2016) The importance of having sulfur. J Genet Genomics. [Abstract]
  • Matei A, Doehlemann G (2016) Cell biology of corn smut disease-Ustilago maydis as a model for biotrophic interactions. Current opinion in microbiology 34:60-66. [Abstract]
  • Beddow J, Stolpe B, Cole PA, Lead JR, Sapp M, Lyons BP, Colbeck I, Whitby C (2016) Nanosilver inhibits nitrification and reduces ammonia-oxidising bacterial but not archaeal amoA gene abundance in estuarine sediments. Environ Microbiol. [Abstract]
  • Breiden M, Simon R (2016) Q&A: How does peptide signaling direct plant development? BMC biology 14:58. [Abstract]
  • Chan KX, Mabbitt PD, Phua SY, Mueller JW, Nisar N, * Gigolashvili T, Stroeher E, Grassl J, Arlt W, Estavillo GM, Jackson CJ, Pogson BJ (2016) Sensing and signaling of oxidative stress in chloroplasts by inactivation of the SAL1 phosphoadenosine phosphatase. Proceedings of the National Academy of Sciences of the United States of America 113(31):E4567-4576. [Abstract]
  • Digel B, Tavakol E, Verderio G, Tondelli A, Xu X, Cattivelli L, Rossini L, von Korff M (2016) Photoperiod-H1 (Ppd-H1) Controls Leaf Size. Plant physiology 172(1):405-415. [Abstract]
  • He Z, Zhang H, Gao S, Lercher MJ, Chen WH, Hu S (2016) Evolview v2: an online visualization and management tool for customized and annotated phylogenetic trees. Nucleic acids research 44(W1):W236-241. [Abstract]
  • Chen WH, Lu G, Bork P, Hu S, Lercher MJ (2016) Energy efficiency trade-offs drive nucleotide usage in transcribed regions. Nature communications 7:11334. [Abstract]
  • Hay A, Tsiantis M (2016) Cardamine hirsuta: a comparative view. Current opinion in genetics & development 39:1-7. [Abstract]
  • Szappanos B, Fritzemeier J, Csorgo B, Lazar V, Lu X, Fekete G, Balint B, Herczeg R, Nagy I, Notebaart RA, Lercher MJ, Pal C, Papp B (2016) Adaptive evolution of complex innovations through stepwise metabolic niche expansion. Nature communications 7:11607. [Abstract]
  • Hyun Y, Richter R, Vincent C, Martinez-Gallegos R, Porri A, Coupland G (2016) Multi-layered Regulation of SPL15 and Cooperation with SOC1 Integrate Endogenous Flowering Pathways at the Arabidopsis Shoot Meristem. Dev Cell 37(3):254-266. [Abstract]
  • Fernandez V, Takahashi Y, Le Gourrierec J, Coupland G (2016) Photoperiodic and thermosensory pathways interact through CONSTANS to promote flowering at high temperature under short days. The Plant journal : for cell and molecular biology 86(5):426-440. [Abstract]
  • Hartleb D, Jarre F, Lercher MJ (2016) Improved Metabolic Models for E. coli and Mycoplasma genitalium from GlobalFit, an Algorithm That Simultaneously Matches Growth and Non-Growth Data Sets. PLoS Comput Biol 12(8):e1005036. [Abstract]
  • Koprivova A, Kopriva S (2016) The importance of having sulfur. J Genet Genomics. [Abstract]
  • de Vries S, von Dahlen JK, Uhlmann C, Schnake A, Kloesges T, Rose LE (2016) Signatures of selection and host adapted gene expression of the Phytophthora infestans RNA-silencing suppressor PSR2. Molecular plant pathology. [Abstract]
  • Misas-Villamil JC, van der Hoorn RA, Doehlemann G (2016) Papain-like cysteine proteases as hubs in plant immunity. The New phytologist. [Abstract]
  • Chen S, Wirthmueller L, Stauber J, Lory N, Holtkotte X, Leson L, Schenkel C, Ahmad M, Hoecker U (2016) The functional divergence between SPA1 and SPA2 in Arabidopsis photomorphogenesis maps primarily to the respective N-terminal kinase-like domain. BMC plant biology 16(1):165. [Abstract]
  • Xu J, Bräutigam A, Li Y, Weber AP, Zhu XG (2016) Systems analysis of cis-regulatory motifs in C4 photosynthesis genes using maize and rice leaf transcriptomic data during a process of de-etiolation. Journal of experimental botany. [Abstract]
  • Pokhilko A, Zhao J, Ebenhöh O, Smith MC, Stark WM, Colloms SD (2016) The mechanism of varphiC31 integrase directionality: experimental analysis and computational modelling. Nucleic acids research. [Abstract]
  • Lehmann MM, Wegener F, Barthel M, Maurino VG, Siegwolf RT, Buchmann N, Werner C, Werner RA (2016) Metabolic Fate of the Carboxyl Groups of Malate and Pyruvate and their Influence on delta(13)C of Leaf-Respired CO2 during Light Enhanced Dark Respiration. Frontiers in plant science 7:739. [Abstract]
  • Rovenich H, Zuccaro A, Thomma BP (2016) Convergent evolution of filamentous microbes towards evasion of glycan-triggered immunity. The New phytologist. [Abstract]
  • Holtkotte X, Dieterle S, Kokkelink L, Artz O, Leson L, Fittinghoff K, Hayama R, Ahmad M, Hoecker U (2016) Mutations in the N-terminal kinase-like domain of the repressor of photomorphogenesis SPA1 severely impair SPA1 function but not light responsiveness in Arabidopsis. The Plant journal : for cell and molecular biology. [Abstract]
  • Reimann S, Poschmann G, Kanonenberg K, Stühler K, Smits Sander HJ, Schmitt L (2016) Interdomain regulation of the ATPase activity of the ABC transporter haemolysin B from Escherichia coli. Biochemical Journal 473(16):2471-2483. [Abstract]
  • Fesel PH, Zuccaro A (2016) Dissecting endophytic lifestyle along the parasitism/mutualism continuum in Arabidopsis. Current opinion in microbiology 32:103-112. [Abstract]
  • Bombarely A, Moser M, Amrad A, Bao M, Bapaume L, Barry CS, Bliek M, Boersma MR, Borghi L, Bruggmann R, Bucher M, D’Agostino N, Davies K, Druege U, Dudareva N, Egea-Cortines M, Delledonne M, Fernandez-Pozo N, Franken P, Grandont L, Heslop-Harrison JS, Hintzsche J, Johns M, Koes R, Lv X, Lyons E, Malla D, Martinoia E, Mattson NS, Morel P, Mueller LA, Muhlemann J, Nouri E, Passeri V, Pezzotti M, Qi Q, Reinhardt D, Rich M, Richert-Poggeler KR, Robbins TP, Schatz MC, Schranz ME, Schuurink RC, Schwarzacher T, Spelt K, Tang H, Urbanus SL, Vandenbussche M, Vijverberg K, Villarino GH, Warner RM, Weiss J, Yue Z, Zethof J, Quattrocchio F, Sims TL, Kuhlemeier C (2016) Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida. Nat Plants 2(6):16074. [Abstract]
  • Taniguchi M, Weber AP, von Caemmerer S (2016) Future Research into C4 Biology. Plant & cell physiology 57(5):879-880. [Abstract]
  • Weiss M, Waller F, Zuccaro A, Selosse MA (2016) Sebacinales – one thousand and one interactions with land plants. The New phytologist 211(1):20-40. [Abstract]
  • Braguy J, Zurbriggen MD (2016) Synthetic strategies for plant signalling studies: molecular toolbox and orthogonal platforms. The Plant journal : for cell and molecular biology. [Abstract]
  • Koprivova A, Kopriva S (2016) Sulfation pathways in plants. Chem Biol Interact. [Abstract]
  • Hacquard S, Kracher B, Hiruma K, Munch PC, Garrido-Oter R, Thon MR, Weimann A, Damm U, Dallery JF, Hainaut M, Henrissat B, Lespinet O, Sacristan S, Ver Loren van Themaat E, Kemen E, McHardy AC, Schulze-Lefert P, O’Connell RJ (2016) Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi. Nature communications 7:11362. [Abstract]
  • Bemm F, Becker D, Larisch C, Kreuzer I, Escalante-Perez M, Schulze WX, Ankenbrand M, Van de Weyer AL, Krol E, Al-Rasheid KA, Mithofer A, Weber AP, Schultz J, Hedrich R (2016) Venus flytrap carnivorous lifestyle builds on herbivore defense strategies. Genome Res 26(6):812-825. [Abstract]
  • He Z, Zhang H, Gao S, Lercher MJ, Chen WH, Hu S (2016) Evolview v2: an online visualization and management tool for customized and annotated phylogenetic trees. Nucleic acids research. [Abstract]
  • Feike D, Seung D, Graf A, Bischof S, Ellick T, Coiro M, Soyk S, Eicke S, Mettler-Altmann T, Lu KJ, Trick M, Zeeman SC, Smith AM (2016) The Starch Granule-Associated Protein EARLY STARVATION1 Is Required for the Control of Starch Degradation in Arabidopsis thaliana Leaves. The Plant cell 28(6):1472-1489. [Abstract]
  • Mackinder LCM, Meyer MT, Mettler-Altmann T, Chen VK, Mitchell MC, Caspari O, Freeman Rosenzweig ES, Pallesen L, Reeves G, Itakura A, Roth R, Sommer F, Geimer S, Mühlhaus T, Schroda M, Goodenough U, Stitt M, Griffiths H, Jonikas MC (2016) A repeat protein links Rubisco to form the eukaryotic carbon-concentrating organelle. Proceedings of the National Academy of Sciences 113(21):5958-5963. [Abstract]
  • Schlüter U, Denton AK, Bräutigam A (2016) Understanding metabolite transport and metabolism in C4 plants through RNA-seq. Current opinion in plant biology 31:83-90. [Abstract]
  • Hiruma K, Gerlach N, Sacristan S, Nakano RT, Hacquard S, Kracher B, Neumann U, Ramirez D, Bucher M, O’Connell RJ, Schulze-Lefert P (2016) Root Endophyte Colletotrichum tofieldiae Confers Plant Fitness Benefits that Are Phosphate Status Dependent. Cell. [Abstract]
  • Schuler ML, Mantegazza O, Weber AP (2016) Engineering C photosynthesis into C chassis in the synthetic biology age. The Plant journal : for cell and molecular biology. [Abstract]
  • Rademacher N, Kern R, Fujiwara T, Mettler-Altmann T, Miyagishima SY, Hagemann M, Eisenhut M, Weber AP (2016) Photorespiratory glycolate oxidase is essential for the survival of the red alga Cyanidioschyzon merolae under ambient CO2 conditions. Journal of experimental botany. [Abstract]
  • Hodges M, Dellero Y, Keech O, Betti M, Raghavendra AS, Sage R, Zhu XG, Allen DK, Weber AP (2016) Perspectives for a better understanding of the metabolic integration of photorespiration within a complex plant primary metabolism network. Journal of experimental botany. [Abstract]
  • Dellero Y, Jossier M, Schmitz J, Maurino VG, Hodges M (2016) Photorespiratory glycolate-glyoxylate metabolism. Journal of experimental botany. [Abstract]
  • Döring F, Streubel M, Bräutigam A, Gowik U (2016) Most photorespiratory genes are preferentially expressed in the bundle sheath cells of the C4 grass Sorghum bicolor. Journal of experimental botany. [Abstract]
  • Betti M, Bauwe H, Busch FA, Fernie AR, Keech O, Levey M, Ort DR, Parry MA, Sage R, Timm S, Walker B, Weber AP (2016) Manipulating photorespiration to increase plant productivity: recent advances and perspectives for crop improvement. Journal of experimental botany. [Abstract]
  • Hagemann M, Kern R, Maurino VG, Hanson DT, Weber AP, Sage RF, Bauwe H (2016) Evolution of photorespiration from cyanobacteria to land plants, considering protein phylogenies and acquisition of carbon concentrating mechanisms. Journal of experimental botany. [Abstract],
  • Calderwood A, Kopriva S, Morris RJ (2016) Transcript Abundance Explains mRNA Mobility Data in Arabidopsis thaliana. The Plant cell 28(3):610-615. [Abstract]
    [Recommendation in F1000]
  • Ball SG, Bhattacharya D, Weber AP (2016) EVOLUTION. Pathogen to powerhouse. Science 351(6274):659-660. [Abstract]
  • Bräutigam A, Gowik U (2016) Photorespiration connects C3 and C4 photosynthesis. Journal of experimental botany. [Abstract]
  • Schlüter U, Weber AP (2016) The Road to C4 Photosynthesis: Evolution of a Complex Trait via Intermediary States. Plant & cell physiology. [Abstract]
  • Agler MT, Ruhe J, Kroll S, Morhenn C, Kim ST, Weigel D, Kemen EM (2016) Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation. PLoS biology 14(1):e1002352. [Abstract]
  • Bernsdorff F, Döring AC, Gruner K, Schuck S, Bräutigam A, Zeier J (2016) Pipecolic Acid Orchestrates Plant Systemic Acquired Resistance and Defense Priming via Salicylic Acid-Dependent and -Independent Pathways. The Plant cell 28(1):102-129. [Abstract]
  • Brumbarova T, Le CT, Ivanov R, Bauer P (2016) Regulation of ZAT12 protein stability: the role of hydrogen peroxide. Plant signaling & behavior:0. [Abstract]
  • Frerigmann H, Pislewska-Bednarek M, Sanchez-Vallet A, Molina A, Glawischnig E, Gigolashvili T, Bednarek P (2016) Regulation of pathogen triggered tryptophan metabolism in Arabidopsis thaliana by MYB transcription factors and indole glucosinolate conversion products. Molecular plant. [Abstract]
  • Koprivova A, Kopriva S (2016) Hormonal control of sulfate uptake and assimilation. Plant molecular biology. [Abstract]
  • Yanai I, Lercher MJ (2016) Forty years of The Selfish Gene are not enough. Genome biology 17:39. [Abstract]
  • Sheehan H, Moser M, Klahre U, Esfeld K, Dell’Olivo A, Mandel T, Metzger S, Vandenbussche M, Freitas L, Kuhlemeier C (2016) MYB-FL controls gain and loss of floral UV absorbance, a key trait affecting pollinator preference and reproductive isolation. Nature genetics 48(2):159-166. [Abstract]
  • Stahl E, Bellwon P, Huber S, Schlaeppi K, Bernsdorff F, Vallat-Michel A, Mauch F, Zeier J (2016) Regulatory and functional aspects of indolic metabolism in plant systemic acquired resistance. Molecular plant. [Abstract]
  • Abdallah HB, Bauer P (2016) Quantitative Reverse Transcription-qPCR-Based Gene Expression Analysis in Plants. Methods in molecular biology 1363:9-24. [Abstract]
  • Wang Q, Hasson A, Rossmann S, Theres K (2016) Divide et impera: boundaries shape the plant body and initiate new meristems. New Phytologist 209(2):485-498. [Abstract]
  • Le CTT, Brumbarova T, Ivanov R, Stoof C, Weber E, Mohrbacher J, Fink-Straube C, Bauer P (2016) ZINC FINGER OF ARABIDOPSIS THALIANA12 (ZAT12) Interacts with FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR (FIT) Linking Iron Deficiency and Oxidative Stress Responses. Plant physiology 170(1):540-557. [Abstract]

 

 

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2015

  • Pires MV, Junior AA, Medeiros DB, Daloso DM, Pham PA, Barros KA, Engqvist MK, Florian A, Krahnert I, Maurino VG, Araujo WL, Fernie AR (2015) The influence of alternative pathways of respiration that utilize branched-chain amino acids following water shortage in Arabidopsis. Plant, cell & environment. [Abstract]
  • Matuszyńska A, Ebenhöh O (2015) A reductionist approach to model photosynthetic self-regulation in eukaryotes in response to light. Biochemical Society transactions 43(6):1133-1139. [Abstract]
  • Kopriva S, Calderwood A, Weckopp SC, Koprivova A (2015) Plant sulfur and Big Data. Plant science : an international journal of experimental plant biology 241:1-10. [Abstract]
  • Brych A, Mascarenhas J, Jaeger E, Charkiewicz E, Pokorny R, Bölker M, Doehlemann G, Batschauer A (2015) White collar 1-induced photolyase expression contributes to UV-tolerance of Ustilago maydis. Microbiology [Abstract]
  • Brilhaus D, Bräutigam A, Mettler-Altmann T, Winter K, Weber APM (2016) Reversible Burst of Transcriptional Changes during Induction of Crassulacean Acid Metabolism in Talinum triangulare. Plant physiology 170(1):102-122.[Abstract]
  • Fesel PH, Zuccaro A (2015) beta-glucan: Crucial component of the fungal cell wall and elusive MAMP in plants. Fungal genetics and biology : FG & B*. [Abstract]
  • Bai Y, Müller, D. B., Srinivas, G., Garrido-Oter, R., Potthoff, E., Rott, M., Dombrowski, N., Münch, P.C., Spaepen, S., Remus-Emsermann, M., Hüttel, B., McHardy, A., Vorholt, J.A., Schulze-Lefert, P (2015) Functional overlap of the Arabidopsis leaf and root microbiotas. Nature. [Abstract]
  • Langner T, Göhre V (2015) Fungal chitinases: function, regulation, and potential roles in plant/pathogen interactions. Current genetics. [Abstract]
  • Aghajanzadeh T, Kopriva S, Hawkesford MJ, Koprivova A, De Kok LJ (2015) Atmospheric H2S and SO2 as sulfur source for Brassica juncea and Brassica rapa: impact on the glucosinolate composition. Frontiers in plant science 6:924 [Abstract]
  • Abedpour N, Kollmann M (2015) Resource constrained flux balance analysis predicts selective pressure on the global structure of metabolic networks. BMC systems biology 9(1):88. [Abstract]
  • de Vries S, Kloesges T, Rose LE (2015) Evolutionarily dynamic, but robust, targeting of resistance genes by the miR482/2118 gene family in the Solanaceae. Genome biology and evolution. [Abstract]
  • Kopriva S (2015) Partitioning of sulfur between primary and secondary metabolism. Sulfur Metabolism in Plants – Molecular Physiology and Ecophysiology of Sulfur, ed De Kok LJ, Hawkesford, M., Rennenberg, H., Saito, K., Schnug, E (Springer), pp 11-20.
  • Mulki MA, von Korff M (2015) CONSTANS controls floral repression by upregulating VERNALIZATION 2 (Vrn-H2) in barley. Plant physiology. [Abstract]
  • Abdallah HB, Bauer P (2016) Quantitative Reverse Transcription-qPCR-Based Gene Expression Analysis in Plants. Methods in molecular biology 1363:9-24. [Abstract]
  • Domröse A, Klein AS, Hage-Hülsmann J, Thies S, Svensson V, Classen T, Pietruszka J, Jaeger KE, Drepper T, Loeschcke A (2015) Efficient recombinant production of prodigiosin in Pseudomonas putida. Frontiers in microbiology 6:972. [Abstract]
  • Cui H, Tsuda K, Parker JE (2015) Effector-triggered immunity: from pathogen perception to robust defense. Annual review of plant biology 66:487-511. [Abstract]
  • Bühler J, Rishmawi L, Pflugfelder D, Huber G, Scharr H, Hülskamp M, Koornneef M, Schurr U, Jahnke S (2015) phenoVein – A tool for leaf vein segmentation and analysis. Plant physiology. [Abstract]
  • Kottb M, Gigolashvili T, Grosskinsky DK, Piechulla B (2015) Trichoderma volatiles effecting Arabidopsis: from inhibition to protection against phytopathogenic fungi. Frontiers in microbiology 6:995. [Abstract]
  • Badia MB, Arias CL, Tronconi MA, Maurino VG, Andreo CS, Drincovich MF, Wheeler MC (2015) Enhanced cytosolic NADP-ME2 activity in A. thaliana affects plant development, stress tolerance and specific diurnal and nocturnal cellular processes. Plant science 240:193-203. [Abstract]
  • Liller CB, Neuhaus R, von Korff M, Koornneef M, van Esse W (2015) Mutations in Barley Row Type Genes Have Pleiotropic Effects on Shoot Branching. PloS one 10(10):e0140246. [Abstract]
  • Mentink RA, Tsiantis M (2015) From limbs to leaves: common themes in evolutionary diversification of organ form. Frontiers in genetics 6:284. [Abstract]
  • Weber AP (2015) Discovering New Biology through Sequencing of RNA. * Plant physiology 169(3):1524-1531. [Abstract]
  • Vom Dorp K, Holzl G, Plohmann C, Eisenhut M, Abraham M, Weber AP, Hanson AD, Dormann P (2015) Remobilization of Phytol from Chlorophyll Degradation Is Essential for Tocopherol Synthesis and Growth of Arabidopsis. The Plant cell. [Abstract]
  • Banhara A, Ding Y, Kuhner R, Zuccaro A, Parniske M (2015) Colonization of root cells and plant growth promotion by Piriformospora indica occurs independently of plant common symbiosis genes. Frontiers in plant science 6:667. [Abstract]
  • Adlakha N, Pfau T, Ebenhöh O, Yazdani SS (2015) Insight into metabolic pathways of the potential biofuel producer, Paenibacillus polymyxa ICGEB2008. Biotechnology for biofuels 8:159. [Abstract]
  • Cartolano M, Pieper B, Lempe J, Tattersall A, Huijser P, Tresch A, Darrah PR, Hay A, Tsiantis M (2015) Heterochrony underpins natural variation in Cardamine hirsuta leaf form. Proceedings of the National Academy of Sciences of the United States of America 112(33):10539-10544. [Abstract]
  • Le Roux C, Huet G, Jauneau A, Camborde L, Tremousaygue D, Kraut A, Zhou B, Levaillant M, Adachi H, Yoshioka H, Raffaele S, Berthome R, Coute Y, Parker JE, Deslandes L (2015) A receptor pair with an integrated decoy converts pathogen disabling of transcription factors to immunity. Cell 161(5):1074-1088. [Abstract]
  • Chen S, Lory N, Stauber J, Hoecker U (2015) Photoreceptor Specificity in the Light-Induced and COP1-Mediated Rapid Degradation of the Repressor of Photomorphogenesis SPA2 in Arabidopsis. PLoS genetics 11(9):e1005516. [Abstract]
  • Redkar A, Villajuana-Bonequi M, Doehlemann G (2015) Conservation of the Ustilago maydis Effector See1 in related smuts. Plant signaling & behavior:0 [Abstract]
  • Digel B, Pankin A, von Korff M (2015) Global Transcriptome Profiling of Developing Leaf and Shoot Apices Reveals Distinct Genetic and Environmental Control of Floral Transition and Inflorescence Development in Barley. The Plant cell. [Abstract]
  • Kopriva S (2015) Plant sulfur nutrition: from Sachs to Big Data. Plant signaling & behavior [Abstract]
  • Czyzewicz N, Wildhagen M, Cattaneo P, Stahl Y, Pinto KG, Aalen RB, Butenko MA, Simon R, Hardtke CS, De Smet I (2015) Antagonistic peptide technology for functional dissection of CLE peptides revisited. Journal of experimental botany. [Abstract]
  • Haag C, Steuten B, Feldbrügge M (2015) Membrane-Coupled mRNA Trafficking in Fungi. Annual review of microbiology. [Abstract]
  • Somssich M, Ma Q, Weidtkamp-Peters S, Stahl Y, Felekyan S, Bleckmann A, Seidel CA, Simon R (2015) Real-time dynamics of peptide ligand-dependent receptor complex formation in planta. Science signaling 8(388):ra76. [Abstract]
  • Vijayakumar V, Liebisch G, Buer B, Xue L, Gerlach N, Blau S, Schmitz J, Bucher M (2015) Integrated multi-omics analysis supports role of lysophosphatidylcholine and related glycerophospholipids in the Lotus japonicus-Glomus intraradices mycorrhizal symbiosis. Plant, cell & environment. [Abstract]
  • Lenders MH, Weidtkamp-Peters S, Kleinschrodt D, Jaeger KE, Smits SH, Schmitt L (2015) Directionality of substrate translocation of the hemolysin A Type I secretion system. Scientific reports 5:12470. [Abstract]
  • Maurino VG, Engqvist MKM (2015) 2-Hydroxy acids in plant metabolism. The Arabidopsis Book 13: e0182. 2015. [Abstract]
  • Frerigmann H, Glawischnig E, Gigolashvili T (2015) The role of MYB34, MYB51 and MYB122 in the regulation of camalexin biosynthesis in Arabidopsis thaliana. Plant Metabolism and Chemodiversity. [Abstract]
  • Engqvist MKM, Schmitz J, Gertzmann A, Florian A, Jaspert N, Arif M, Balazadeh S, Mueller-Roeber B, Fernie AR and Maurino VG (2015) GOX3, a glycolate oxidase homologue of yeast L-lactate cytochrome c oxidorreductase, supports L-lactate oxidation in roots of Arabidopsis thaliana. Plant Physiology. [Abstract]
  • Hüdig M, Maier A, Scherrers I, Seidel L, Jansen EEW, Mettler-Altmann T, Engqvist MKM and Maurino VG (2015) Plants Possess a Cyclic Mitochondrial Metabolic Pathway similar to the Mammalian Metabolic Repair Mechanism Involving Malate Dehydrogenase and L-2hydroxyglutarate Dehydrogenase. Plant & Cell Physiology. [Abstract]
  • Ort DR, Merchant SS, Alric J, Barkan A, Blankenship RE, Bock R, Croce R, Hanson MR, Hibberd JM, Long SP, Moore TA, Moroney J, Niyogi KK, Parry MA, Peralta-Yahya PP, Prince RC, Redding KE, Spalding MH, van Wijk KJ, Vermaas WF, von Caemmerer S, Weber AP, Yeates TO, Yuan JS, Zhu XG (2015) Redesigning photosynthesis to sustainably meet global food and bioenergy demand. Proceedings of the National Academy of Sciences of the United States of America 112(28):8529-8536. [Abstract]
  • Soto D, Cordoba JP, Villarreal F, Bartoli C, Schmitz J, Maurino VG, Braun HP, Pagnussat GC, Zabaleta E (2015) Functional characterization of mutants affected in the carbonic anhydrase domain of the respiratory complex I in Arabidopsis thaliana. The Plant journal : for cell and molecular biology. [Abstract]
  • Steffens A, Bräutigam A, Jakoby M, Hülskamp M (2015) The BEACH Domain Protein SPIRRIG Is Essential for Arabidopsis Salt Stress Tolerance and Functions as a Regulator of Transcript Stabilization and Localization. PLoS biology 13(7):e1002188. [Abstract]
  • Butenko MA, Simon R (2015) Beyond the meristems: similarities in the CLAVATA3 and INFLORESCENCE DEFICIENT IN ABSCISSION peptide mediated signalling pathways. Journal of experimental botany.
    [Abstract]
  • Mai HJ, Lindermayr C, von Toerne C, Fink-Straube C, Durner J, Bauer P (2015) Iron and FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-dependent regulation of proteins and genes in Arabidopsis thaliana roots. Proteomics. [Abstract]
  • Lahrmann U, Strehmel N, Langen G, Frerigmann H, Leson L, Ding Y, Scheel D, Herklotz S, Hilbert M, Zuccaro A (2015) Mutualistic root endophytism is not associated with the reduction of saprotrophic traits and requires a noncompromised plant innate immunity. The New phytologist 207(3):841-857. [Abstract]
  • Loeschcke A, Thies S (2015) Pseudomonas putida-a versatile host for the production of natural products. Appl Microbiol Biotechnol. [Abstract]
  • Göhre V (2015) Immune responses: Photosynthetic defence. Nature Plants 1.[Abstract]
  • Hemetsberger C, Mueller AN, Matei A, Herrberger C, Hensel G, Kumlehn J, Mishra B, Sharma R, Thines M, Huckelhoven R, Doehlemann G (2015) The fungal core effector Pep1 is conserved across smuts of dicots and monocots. The New phytologist 206(3):1116-1126. [Abstract]
  • Zhu L, Bu Q, Xu X, Paik I, Huang X, Hoecker U, Deng XW, Huq E (2015) CUL4 forms an E3 ligase with COP1 and SPA to promote light-induced degradation of PIF1. Nature communications 6:7245. [Abstract]
  • Pohlmann T, Baumann S, Haag C, Albrecht M, Feldbrügge M (2015) A FYVE zinc finger domain protein specifically links mRNA transport to endosome trafficking. eLife 4. [Abstract]
  • Langner T, Özturk M, Hartmann S, Cord-Landwehr S, Moerschbacher B, Walton JD, Göhre V (2015) Chitinases are essential for cell separation in Ustilago maydis. Eukaryotic cell. [Abstract]
  • Simon S, Ruhl M, de Montaigu A, Wotzel S, Coupland G (2015) Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae. Molecular biology and evolution. [Abstract]
  • Khonsari AS, Kollmann M (2015) Perception and regulatory principles of microbial growth control. PloS one 10(5):e0126244. [Abstract]
  • Lyu MJ, Gowik U, Kelly S, Covshoff S, Mallmann J, Westhoff P, Hibberd JM, Stata M, Sage RF, Lu H, Wei X, Wong GK, Zhu XG (2015) RNA-Seq based phylogeny recapitulates previous phylogeny of the genus Flaveria (Asteraceae) with some modifications. BMC evolutionary biology 15:116. [Abstract]
  • Lo Presti L, Lanver D, Schweizer G, Tanaka S, Liang L, Tollot M, Zuccaro A, Reissmann S, Kahmann R (2015) Fungal effectors and plant susceptibility. Annual review of plant biology 66:513-545. [Abstract]
  • Hacquard S, Garrido-Oter R, Gonzalez A, Spaepen S, Ackermann G, Lebeis S, McHardy AC, Dangl JL, Knight R, Ley R, Schulze-Lefert P (2015) Microbiota and Host Nutrition across Plant and Animal Kingdoms. Cell host & microbe 17(5):603-616. [Abstract]
  • Strand DD, Livingston AK, Satoh-Cruz M, Froehlich JE, Maurino VG, Kramer DM (2015) Activation of cyclic electron flow by hydrogen peroxide in vivo. Proceedings of the National Academy of Sciences of the United States of America 112(17):5539-5544. [Abstract]
  • Karkar S, Facchinelli F, Price DC, Weber AP, Bhattacharya D (2015) Metabolic connectivity as a driver of host and endosymbiont integration. Proceedings of the National Academy of Sciences of the United States of America. [Abstract]
  • Desouki AA, Jarre F, Gelius-Dietrich G, Lercher MJ (2015) CycleFreeFlux: efficient removal of thermodynamically infeasible loops from flux distributions. Bioinformatics.[Abstract]
  • Redkar A, Hoser R, Schilling L, Zechmann B, Krzymowska M, Walbot V, Doehlemann G (2015) A Secreted Effector Protein of Ustilago maydis Guides Maize Leaf Cells to Form Tumors. The Plant cell. [Abstract]
  • Baumann S, Takeshita N, Grun N, Fischer R, Feldbrügge M (2015) Live cell imaging of endosomal trafficking in fungi. Methods in molecular biology 1270:347-363. [Abstract]
  • Bulgarelli D, Garrido-Oter R, Münch PC, Weiman A, Dröge J, Pan Y, McHardy AC, Schulze-Lefert P (2015) Structure and function of the bacterial root microbiota in wild and domesticated barley. Cell host & microbe 17(3):392-403. [Abstract]
  • Kohler A, Kuo A, Nagy LG, Morin E, Barry KW, Buscot F, Canback B, Choi C, Cichocki N, Clum A, Colpaert J, Copeland A, Costa MD, Dore J, Floudas D, Gay G, Girlanda M, Henrissat B, Herrmann S, Hess J, Hogberg N, Johansson T, Khouja HR, LaButti K, Lahrmann U, Levasseur A, Lindquist EA, Lipzen A, Marmeisse R, Martino E, Murat C, Ngan CY, Nehls U, Plett JM, Pringle A, Ohm RA, Perotto S, Peter M, Riley R, Rineau F, Ruytinx J, Salamov A, Shah F, Sun H, Tarkka M, Tritt A, Veneault-Fourrey C, Zuccaro A, Mycorrhizal Genomics Initiative C, Tunlid A, Grigoriev IV, Hibbett DS, & Martin F (2015) Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists. Nature genetics. doi 10.1038/ng.3223 [Abstract]
  • Willing E-M, Rawat V, Mandáková T, Maumus F, James GV, Nordström KJV, Becker C, Warthmann N, Chica C, Szarzynska B, Zytnicki M, Albani MC, Kiefer C, Bergonzi S, Castaings L, Mateos JL, Berns MC, Bujdoso N, Piofczyk T, de Lorenzo L, Barrero-Sicilia C, Mateos I, Piednoël M, Hagmann J, Chen-Min-Tao R, Iglesias-Fernández R, Schuster SC, Alonso-Blanco C, Roudier F, Carbonero P, Paz-Ares J, Davis SJ, Pecinka A, Quesneville H, Colot V, Lysak MA, Weigel D, Coupland G, & Schneeberger K (2015) Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation. Nature Plants 1. [Abstract]
  • Hyun Y, Kim J, Cho SW, Choi Y, Kim JS, & Coupland G (2015) Site-directed mutagenesis in Arabidopsis thaliana using dividing tissue-targeted RGEN of the CRISPR/Cas system to generate heritable null alleles. Planta 241(1):271-284. [Abstract]
  • Ordoñez-Herrera N, Fackendahl P, Yu X, Schaefer S, Koncz C, & Hoecker U (2015) A cop1 spa Mutant Deficient in COP1 and SPA Proteins Reveals Partial Co-Action of COP1 and SPA during Arabidopsis Post-Embryonic Development and Photomorphogenesis. Molecular plant (0).[Abstract]
  • Pade N, Linka N, Ruth W, Weber AP, & Hagemann M (2015) Floridoside and isofloridoside are synthesized by trehalose 6-phosphate synthase-like enzymes in the red alga Galdieria sulphuraria. The New phytologist 205(3):1227-1238.[Abstract]
  • Pokhilko A & Ebenhöh O (2015) Mathematical modelling of diurnal regulation of carbohydrate allocation by osmo-related processes in plants. Journal of the Royal Society, Interface / the Royal Society 12(104).[Abstract]
  • Pokhilko A, Bou-Torrent J, Pulido P, Rodriguez-Concepcion M, & Ebenhöh O (2015) Mathematical modelling of the diurnal regulation of the MEP pathway in Arabidopsis. The New phytologist. [Abstract]
  • Gerlach N, Schmitz J, Polatajko A, Schluter U, Fahnenstich H, Witt S, Fernie AR, Uroic K, Scholz U, Sonnewald U, & Bucher M (2015) An integrated functional approach to dissect systemic responses in maize to arbuscular mycorrhizal symbiosis. Plant, cell & environment. [Abstract]
  • Zhao Y, Wang J, Liu Y, Miao H, Cai C, Shao Z, Guo R, Sun B, Jia C, Zhang L, Gigolashvili T, Wang Q (2015) Classic myrosinase-dependent degradation of indole glucosinolate attenuates fumonisin B1-induced programmed cell death in Arabidopsis. The Plant journal : for cell and molecular biology 81(6):920-933. [Abstract]
  • Weckopp SC & Kopriva S (2015) Are changes in sulfate assimilation pathway needed for evolution of C4 photosynthesis? Frontiers in plant science 5. [Abstract]
  • Mateos JL, Madrigal P, Tsuda K, Rawat V, Richter R, Romera-Branchat M, Fornara F, Schneeberger K, Krajewski P, Coupland G (2015) Combinatorial activities of SHORT VEGETATIVE PHASE and FLOWERING LOCUS C define distinct modes of flowering regulation in Arabidopsis. Genome biology 16:31. [Abstract]
  • Facchinelli F, Weber APM (2015) Analysis of Cyanophora paradoxa tells important lessons on plastid evolution. Perspectives in Phycology 2(1):3-10. [Abstract]
  • Jung B, Ludewig F, Schulz A, Meißner G, Wöstefeld N, Flügge U-I, Pommerrenig B, Wirsching P, Sauer N, Koch W, Sommer F, Mühlhaus T, Schroda M, Cuin TA, Graus D, Marten I, Hedrich R, & Neuhaus HE (2015) Identification of the transporter responsible for sucrose accumulation in sugar beet taproots. Nature Plants 1. [Abstract]
  • Kluth M, Stindt J, Dröge C, Linnemann D, Kubitz R, Schmitt L (2015) A Mutation within the Extended X Loop Abolished Substrate-induced ATPase Activity of the Human Liver ATP-binding Cassette (ABC) Transporter MDR3. Journal of Biological Chemistry 290(8):4896-4907. [Abstract]
  • Xue L, Cui H, Buer B, Vijayakumar V, Delaux P-M, Junkermann S, & Bucher M (2015) Network of GRAS Transcription Factors Involved in the Control of Arbuscule Development in Lotus japonicus. Plant physiology. [Abstract]
  • Kemen AC, Agler MT, Kemen E (2015) Host-microbe and microbe-microbe interactions in the evolution of obligate plant parasitism. The New phytologist. [Abstract]
  • Rast-Somssich MI, Broholm S, Jenkins H, Canales C, Vlad D, Kwantes M, Bilsborough G, Dello Ioio R, Ewing RM, Laufs P, Huijser P, Ohno C, Heisler MG, Hay A, Tsiantis M (2015) Alternate wiring of a KNOXI genetic network underlies differences in leaf development of A. thaliana and C. hirsuta. Genes & development 29(22):2391-2404.[Abstract]

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2014

  • Bohrer A-S, Kopriva S, & Takahashi H (2014) Plastid-cytosol partitioning and integration of metabolic pathways for APS/PAPS biosynthesis in Arabidopsis thaliana. Frontiers in plant science 5. [Abstract]
  • Hawkesford MJ, Kopriva S, De Kok LJ (Eds)(2014) Nutrient Use Efficiency in Plants, Concepts and Approaches. Plant Ecophysiology Series, Vol. 10, Springer [link]
  • Jain K, Krause K, Grewe F, Nelson GF, Weber AP, Christensen AC, & Mower JP (2014) Extreme features of the Galdieria sulphuraria organellar genomes: a consequence of polyextremophily? Genome biology and evolution. [Abstract]
  • Brumbarova T, Bauer P, & Ivanov R (2014) Molecular mechanisms governing Arabidopsis iron uptake. Trends in plant science. [Abstract]
  • Alcazar R, von Reth M, Bautor J, Chae E, Weigel D, Koornneef M, & Parker JE (2014) Analysis of a plant complex resistance gene locus underlying immune-related hybrid incompatibility and its occurrence in nature. PLoS genetics 10(12):e1004848. [Abstract]
  • Parker JE (2014) Co-opting the Cell-Cycle Machinery for Plant Immunity. Cell host & microbe 16(6):707-709. [Abstract]
  • Maier A & Hoecker U (2014) COP1/SPA ubiquitin ligase complexes repress anthocyanin accumulation under low light and high light conditions. Plant signaling & behavior:0. [Abstract]
  • Eisenhut M, Hocken N, & Weber AP (2014) Plastidial metabolite transporters integrate photorespiration with carbon, nitrogen, and sulfur metabolism. Cell calcium. [Abstract]
  • Balcerowicz M & Hoecker U (2014) Auxin – a novel regulator of stomata differentiation. Trends in plant science 19(12):747-749. [Abstract]
  • Bucher M, Hause B, Krajinski F, & Kuster H (2014) Through the doors of perception to function in arbuscular mycorrhizal symbioses. The New phytologist 204(4):833-840. [Abstract]
  • Calderwood A, Kopriva S, & Morris RJ (2014) Predictive Sulfur Metabolism – a field in flux. Frontiers in plant science 5. [Abstract]
  • Koprivova A & Kopriva S (2014) Molecular mechanisms of regulation of sulfate assimilation: first steps on a long road. Frontiers in plant science 5:589. [Abstract]
  • Frerigmann H & Gigolashvili T (2014) Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency. Frontiers in plant science 5. [Abstract]
  • Wittelsburger U, Pfeifer B, & Lercher MJ (2014) WhopGenome: high-speed access to whole-genome variation and sequence data in R. Bioinformatics. [Abstract]
  • Guttman D, McHardy AC, & Schulze-Lefert P (2014) Microbial genome-enabled insights into plant-microorganism interactions. Nature reviews. Genetics. [Abstract]
  • Pokhilko A, Flis A, Sulpice R, Stitt M, & Ebenhoh O (2014) Adjustment of carbon fluxes to light conditions regulates the daily turnover of starch in plants: a computational model. Molecular bioSystems 10(3):613-627. [Abstract]
  • Kulahoglu C, Denton AK, Sommer M, Mass J, Schliesky S, Wrobel TJ, Berckmans B, Gongora-Castillo E, Buell CR, Simon R, De Veylder L, Brautigam A, & Weber AP (2014) Comparative Transcriptome Atlases Reveal Altered Gene Expression Modules between Two Cleomaceae C3 and C4 Plant Species. The Plant cell 26(8):3243-3260. [Abstract]
  • Pankin A, Campoli C, Dong X, Kilian B, Sharma R, Himmelbach A, Saini R, Davis SJ, Stein N, Schneeberger K, & von Korff M (2014) Mapping-by-Sequencing Identifies HvPHYTOCHROME C as a Candidate Gene for the early maturity 5 Locus Modulating the Circadian Clock and Photoperiodic Flowering in Barley. Genetics. [Abstract]
  • Rishmawi L, Sun H, Schneeberger K, Hülskamp M, & Schrader A (2014) Rapid identification of a natural knockout allele of ARMADILLO REPEAT-CONTAINING KINESIN 1 that causes root hair branching by mapping-by-sequencing. Plant physiology. [Abstract]
  • Kaschner M, Loeschcke A, Krause J, Minh BQ, Heck A, Endres S, Svensson V, Wirtz A, von Haeseler A, Jaeger KE, Drepper T, & Krauss U (2014) Discovery of the first light-dependent protochlorophyllide oxidoreductase in anoxygenic phototrophic bacteria.Molecular microbiology 93(5):1066-1078.[Abstract]
  • Liebl W, Angelov A, Juergensen J, Chow J, Loeschcke A, Drepper T, Classen T, Pietruzska J, Ehrenreich A, Streit WR, & Jaeger KE (2014) Alternative hosts for functional (meta)genome analysis. Applied microbiology and biotechnology. [Abstract]
  • Pick TR & Weber APM (2014) Unknown components of the plastidial permeome. Frontiers in plant science 5. [Abstract]
  • Pallakies H & Simon R (2014) The CLE40 and CRN/CLV2 signaling pathways antagonistically control root meristem growth in Arabidopsis. Molecular plant. [Abstract]
  • Külahoglu C, Denton AK, Sommer M, Mass J, Schliesky S, Wrobel TJ, Berckmans B, Gongora-Castillo E, Buell CR, Simon R, De Veylder L, Bräutigam A, & Weber AP (2014) Comparative Transcriptome Atlases Reveal Altered Gene Expression Modules between Two Cleomaceae C3 and C4 Plant Species. The Plant cell. [Abstract]
  • Jansen RP, Niessing D, Baumann S, & Feldbrugge M (2014) mRNA transport meets membrane traffic. Trends in genetics : TIG. [Abstract]
  • Balcerowicz M, Ranjan A, Rupprecht L, Fiene G, & Hoecker U (2014) Auxin represses stomatal development in dark-grown seedlings via Aux/IAA proteins. Development 141(16):3165-3176. [Abstract]
  • Liu L, Adrian J, Pankin A, Hu J, Dong X, von Korff M, & Turck F (2014) Induced and natural variation of promoter length modulates the photoperiodic response of FLOWERING LOCUS T. Nature communications 5:4558. [Abstract]
  • Gigolashvili T & Kopriva S (2014) Transporters in plant sulfur metabolism. Frontiers in plant science 5. [Abstract]
  • Peter S, Zell MB, Blum C, Stuhl A, Elgass K, Sackrow M, Subramaniam V, Meixner AJ, Harter K, Maurino VG, & Schleifenbaum FE (2014) Photosynthesis in a different light: spectro-microscopy for in vivo characterization of chloroplasts. Frontiers in plant science 5:292. [Abstract]
  • Pfeifer B, Wittelsburger U, Ramos-Onsins SE, & Lercher MJ (2014) PopGenome: an efficient Swiss army knife for population genomic analyses in R. Molecular biology and evolution 31(7):1929-1936. [Abstract]
  • Andres F, Porri A, Torti S, Mateos J, Romera-Branchat M, Garcia-Martinez JL, Fornara F, Gregis V, Kater MM, & Coupland G (2014) SHORT VEGETATIVE PHASE reduces gibberellin biosynthesis at the Arabidopsis shoot apex to regulate the floral transition. Proceedings of the National Academy of Sciences of the United States of America 111(26):E2760-2769. [Abstract]
  • Castaings L, Bergonzi S, Albani MC, Kemi U, Savolainen O, & Coupland G (2014) Evolutionary conservation of cold-induced antisense RNAs of FLOWERING LOCUS C in Arabidopsis thaliana perennial relatives. Nature communications 5:4457. [Abstract]
  • Romera-Branchat M, Andres F, & Coupland G (2014) Flowering responses to seasonal cues: what’s new? Current opinion in plant biology 21C:120-127. [Abstract]
  • Frerigmann H, Berger B, & Gigolashvili T (2014) bHLH05 is an Interaction Partner of MYB51 and a Novel Regulator of Glucosinolate Biosynthesis in Arabidopsis. Plant physiology. [Abstract]
  • Ranjan A, Dickopf S, Ullrich KK, Rensing SA, & Hoecker U (2014) Functional analysis of COP1 and SPA orthologs from Physcomitrella and rice during photomorphogenesis of transgenic Arabidopsis reveals distinct evolutionary conservation. BMC plant biology 14:178. [Abstract]
  • Pankin A, Campoli C, Dong X, Kilian B, Sharma R, Himmelbach A, Saini R, Davis SJ, Stein N, Schneeberger K, & von Korff M (2014) Mapping-by-Sequencing Identifies HvPHYTOCHROME C as a Candidate Gene for the early maturity 5 Locus Modulating the Circadian Clock and Photoperiodic Flowering in Barley. Genetics. [Abstract]
  • Campoli C & von Korff M (2014) Chapter Five – Genetic Control of Reproductive Development in Temperate Cereals. Advances in Botanical Research, ed Fabio F (Academic Press), Vol Volume 72, pp 131-158. [Abstract]
  • Müller LM, Von Korff M, & Davis SJ (2014) Connections between circadian clocks and carbon metabolism reveal species-specific effects on growth control. Journal of experimental botany 65(11):2915-2923. [Abstract]
  • Zuccaro A, Lahrmann U, & Langen G (2014) Broad compatibility in fungal root symbioses. Current opinion in plant biology 20C:135-145. [Abstract]
  • Mallmann J, Heckmann D, Bräutigam A, Lercher MJ, Weber AP, Westhoff P, & Gowik U (2014) The role of photorespiration during the evolution of C4 photosynthesis in the genus Flaveria. eLife:e02478. [Abstract]
  • Wang Y, Brautigam A, Weber AP, & Zhu XG (2014) Three distinct biochemical subtypes of C4 photosynthesis? A modelling analysis. Journal of experimental botany 65(13):3567-3578. [Abstract]
  • Aldous SH, Weise SE, Sharkey TD, Waldera-Lupa DM, Stuhler K, Mallmann J, Groth G, Gowik U, Westhoff P, & Arsova B (2014) Evolution of the phosphoenolpyruvate carboxylase protein kinase family in C3 and C4 Flaveria species. Plant physiology. [Abstract]
  • Maurer F, Naranjo Arcos MA, & Bauer P (2014) Responses of a Triple Mutant Defective in Three Iron Deficiency-Induced BASIC HELIX-LOOP-HELIX Genes of the Subgroup Ib(2) to Iron Deficiency and Salicylic Acid. PloS one 9(6):e99234. [Abstract]
  • Xu HC, Grusdat M, Pandyra AA, Polz R, Huang J, Sharma P, Deenen R, Kohrer K, Rahbar R, Diefenbach A, Gibbert K, Lohning M, Hocker L, Waibler Z, Haussinger D, Mak TW, Ohashi PS, Lang KS, & Lang PA (2014) Type I Interferon Protects Antiviral CD8 T Cells from NK Cell Cytotoxicity. Immunity. [Abstract]
  • Staehr P, Lottgert T, Christmann A, Krueger S, Rosar C, Rolcik J, Novak O, Strnad M, Bell K, Weber AP, Flugge UI, & Hausler RE (2014) Reticulate leaves and stunted roots are independent phenotypes pointing at opposite roles of the phosphoenolpyruvate/phosphate translocator defective in cue1 in the plastids of both organs. Frontiers in plant science 5:126. [Abstract]
  • Sewelam N, Jaspert N, Van Der Kelen K, Tognetti VB, Schmitz J, Frerigmann H, Stahl E, Zeier J, Van Breusegem F, & Maurino VG (2014) Spatial H2O2 Signalling Specificity: H2O2 from Chloroplasts and Peroxisomes Modulates the Plant Transcriptome Differentially. Molecular plant. [Abstract]
  • Nomura Y, Izumi A, Fukunaga Y, Kusumi K, Iba K, Watanabe S, Nakahira Y, Weber AP, Nozawa A, & Tozawa Y (2014) Diversity in Guanosine 3’,5’-Bisdiphosphate (ppGpp) Sensitivity among Guanylate Kinases of Bacteria and Plants. The Journal of biological chemistry 289(22):15631-15641. [Abstract]
  • Pelletreau KN, Weber AP, Weber KL, & Rumpho ME (2014) Lipid Accumulation during the Establishment of Kleptoplasty in Elysia chlorotica. PloS one 9(5):e97477. [Abstract]
  • Bucher M, Hause B, Krajinski F, & Küster H (2014) Through the doors of perception to function in arbuscular mycorrhizal symbioses. New Phytologist:n/a-n/a.[Abstract]
  • Krajinski F, Courty PE, Sieh D, Franken P, Zhang H, Bucher M, Gerlach N, Kryvoruchko I, Zoeller D, Udvardi M, & Hause B (2014) The H+-ATPase HA1 of Medicago truncatula Is Essential for Phosphate Transport and Plant Growth during Arbuscular Mycorrhizal Symbiosis. The Plant cell 26(4):1808-1817. [Abstract]
  • Aubry S, Smith-Unna RD, Boursnell CM, Kopriva S, & Hibberd JM (2014) Transcript residency on ribosomes reveals a key role for the Arabidopsis thaliana bundle sheath in sulfur and glucosinolate metabolism. The Plant journal : for cell and molecular biology 78(4):659-673. [Abstract]
  • Hay AS, Pieper B, Cooke E, Mandakova T, Cartolano M, Tattersall AD, Ioio RD, McGowan SJ, Barkoulas M, Galinha C, Rast MI, Hofhuis H, Then C, Plieske J, Ganal M, Mott R, Martinez-Garcia JF, Carine MA, Scotland RW, Gan X, Filatov DA, Lysak MA, & Tsiantis M (2014) Cardamine hirsuta: a versatile genetic system for comparative studies. The Plant journal : for cell and molecular biology 78(1):1-15. [Abstract]
  • Mascher M, Gerlach N, Gahrtz M, Bucher M, Scholz U, & Dresselhaus T (2014) Sequence and ionomic analysis of divergent strains of maize inbred line b73 with an altered growth phenotype. PloS one 9(5):e96782. [Abstract]
  • Rishmawi L, Pesch M, Juengst C, Schauss AC, Schrader A, & Hulskamp M (2014) Non-cell-autonomous regulation of root hair patterning genes by WRKY75 in Arabidopsis. Plant physiology 165(1):186-195. [Abstract]
  • Blum A, Brumbarova T, Bauer P, & Ivanov R (2014) Hormone influence on the spatial regulation of expression in iron-deficient roots. Plant signaling & behavior 9(4). [Abstract]
  • Brouwer P, Bräutigam A, Kulahoglu C, Tazelaar AO, Kurz S, Nierop KG, van der Werf A, Weber AP, & Schluepmann H (2014) Azolla domestication towards a biobased economy? The New phytologist 202(3):1069-1082. [Abstract]
  • Paulus JK, Forster K, & Groth G (2014) Direct and selective small-molecule inhibition of photosynthetic PEP carboxylase: New approach to combat C weeds in arable crops. FEBS letters. [Abstract]
  • Bräutigam A, Schliesky S, Kulahoglu C, Osborne CP, & Weber AP (2014) Towards an integrative model of C4 photosynthetic subtypes: insights from comparative transcriptome analysis of NAD-ME, NADP-ME, and PEP-CK C4 species. Journal of experimental botany. doi:10.1093/jxb/eru100 [Abstract]
  • Calderwood A & Kopriva S (2014) Hydrogen sulfide in plants: From dissipation of excess sulfur to signaling molecule. Nitric oxide : biology and chemistry / official journal of the Nitric Oxide Society. doi:10.1016/j.niox.2014.02.005 [Abstract]
  • Engqvist MKM, Eßer C, Maier A, Lercher MJ, & Maurino VG (2014) Mitochondrial 2-hydroxyglutarate metabolism. Mitochondrion. dx.doi.org/10.1016/j.mito.2014.02.009. [Abstract]
  • Esser C, Kuhn A, Groth G, Lercher MJ, & Maurino VG (2014) Plant and Animal Glycolate Oxidases Have a Common Eukaryotic Ancestor and Convergently Duplicated to Evolve Long-Chain 2-Hydroxy Acid Oxidases. Molecular biology and evolution. [Abstract]
  • Žádníková P & Simon R (2014) How boundaries control plant development. Current opinion in plant biology 17(0):116-125. [Abstract]
  • Ivanov R, Brumbarova T, Blum A, Jantke AM, Fink-Straube C, & Bauer P (2014) SORTING NEXIN1 is required for modulating the trafficking and stability of the Arabidopsis IRON-REGULATED TRANSPORTER1. The Plant cell 26(3):1294-1307. [Abstract]
  • Lintala M, Schuck N, Thormahlen I, Jungfer A, Weber KL, Weber AP, Geigenberger P, Soll J, Bolter B, & Mulo P (2014) Arabidopsis tic62 trol mutant lacking thylakoid-bound ferredoxin-NADP+ oxidoreductase shows distinct metabolic phenotype. Molecular plant 7(1):45-57. [Abstract]
  • Bhide A, Schliesky S, Reich M, Weber AP, & Becker A (2014) Analysis of the floral transcriptome of Tarenaya hassleriana (Cleomaceae), a member of the sister group to the Brassicaceae: towards understanding the base of morphological diversity in Brassicales. BMC genomics 15:140. [Abstract]
  • Schlaeppi K, Dombrowski N, Oter RG, Ver Loren van Themaat E, & Schulze-Lefert P (2014) Quantitative divergence of the bacterial root microbiota in Arabidopsis thaliana relatives. Proceedings of the National Academy of Sciences of the United States of America 111(2):585-592. [Abstract]
  • Lundquist PK, Rosar C, Brautigam A, & Weber AP (2014) Plastid signals and the bundle sheath: mesophyll development in reticulate mutants. Molecular plant 7(1):14-29. [Abstract]
  • Habte E, Müller LM, Shtaya M, Davis SJ, & Von Korff M (2014) Osmotic stress at the barley root affects expression of circadian clock genes in the shoot. Plant, cell & environment doi:10.1111/pce.12242 [Abstract]
  • Vlad D, Kierzkowski D, Rast MI, Vuolo F, Dello Ioio R, Galinha C, Gan X, Hajheidari M, Hay A, Smith RS, Huijser P, Bailey CD, & Tsiantis M (2014) Leaf shape evolution through duplication, regulatory diversification, and loss of a homeobox gene. Science 343(6172):780-783. [Abstract]
  • Frerigmann H & Gigolashvili T (2014) MYB34, MYB51 and MYB122 Distinctly Regulate Indolic Glucosinolate Biosynthesis in Arabidopsis thaliana. Molecular plant 10.1093/mp/ssu004. [Abstract]
  • Schönknecht G, Weber AP, & Lercher MJ (2014) Horizontal gene acquisitions by eukaryotes as drivers of adaptive evolution. BioEssays : news and reviews in molecular, cellular and developmental biology 36(1):9-20. [Abstract]
  • Christian N, Skupin A, Morante S, Jansen K, Rossi G, & Ebenhöh O (2014) Mesoscopic behavior from microscopic Markov dynamics and its application to calcium release channels. Journal of theoretical biology 343:102-112. [Abstract]
  • Baumann S, Konig J, Koepke J, & Feldbrügge M (2014) Endosomal transport of septin mRNA and protein indicates local translation on endosomes and is required for correct septin filamentation. EMBO Rep 15(1):94-102. [Abstract]
  • Terfrüchte M, Joehnk B, Fajardo-Somera R, Braus GH, Riquelme M, Schipper K, & Feldbrügge M (2014) Establishing a versatile Golden Gate cloning system for genetic engineering in fungi. Fungal Genetics and Biology 62(0):1-10. [Abstract]

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2013

  • Willmann M, Gerlach N, Buer B, Polatajko A, Nagy R, Koebke E, Jansa J, Flisch R, & Bucher M (2013) Mycorrhizal phosphate uptake pathway in maize: vital for growth and cob development on nutrient poor agricultural and greenhouse soils. Frontiers in plant science 4:533. [Abstract]
  • Weber AP & Bräutigam A (2013) The role of membrane transport in metabolic engineering of plant primary metabolism. Current opinion in biotechnology 24(2):256-262. [Abstract]
  • Weber AP & Bauwe H (2013) Photorespiration—a driver for evolutionary innovations and key to better crops. Plant biology 15(4):621-623. [Abstract]
  • Vogel-Adghough D, Stahl E, Navarova H, & Zeier J (2013) Pipecolic acid enhances resistance to bacterial infection and primes salicylic acid and nicotine accumulation in tobacco. Plant signaling & behavior 8(11). [Abstract]
  • Stahl Y, Grabowski S, Bleckmann A, Kuhnemuth R, Weidtkamp-Peters S, Pinto KG, Kirschner GK, Schmid JB, Wink RH, Hulsewede A, Felekyan S, Seidel CA, & Simon R (2013) Moderation of Arabidopsis root stemness by CLAVATA1 and ARABIDOPSIS CRINKLY4 receptor kinase complexes. Current biology : CB 23(5):362-371. [Abstract]
  • Schulze S, Mallmann J, Burscheidt J, Koczor M, Streubel M, Bauwe H, Gowik U, & Westhoff P (2013) Evolution of C4 photosynthesis in the genus flaveria: establishment of a photorespiratory CO2 pump. The Plant cell 25(7):2522-2535. [Abstract]
  • Schönknecht G, Chen WH, Ternes CM, Barbier GG, Shrestha RP, Stanke M, Bräutigam A, Baker BJ, Banfield JF, Garavito RM, Carr K, Wilkerson C, Rensing SA, Gagneul D, Dickenson NE, Oesterhelt C, Lercher MJ, & Weber AP (2013) Gene transfer from bacteria and archaea facilitated evolution of an extremophilic eukaryote. Science 339(6124):1207-1210. [Abstract]
  • Schlieper D, Forster K, Paulus JK, & Groth G (2013) Resolving the Activation Site of Positive Regulators in Plant Phosphoenolpyruvate Carboxylase. Molecular plant. [Abstract]
  • Qiu H, Price DC, Weber AP, Facchinelli F, Yoon HS, & Bhattacharya D (2013) Assessing the bacterial contribution to the plastid proteome. Trends in plant science 18(12):680-687. [Abstract]
  • Pick TR, Bräutigam A, Schulz MA, Obata T, Fernie AR, & Weber AP (2013) PLGG1, a plastidic glycolate glycerate transporter, is required for photorespiration and defines a unique class of metabolite transporters. Proceedings of the National Academy of Sciences of the United States of America 110(8):3185-3190. [Abstract]
  • Paulus JK, Schlieper D, & Groth G (2013) Greater efficiency of photosynthetic carbon fixation due to single amino-acid substitution. Nature communications 4:1518. [Abstract]
  • Paulus JK, Niehus C, & Groth G (2013) Evolution of c4 phosphoenolpyruvate carboxylase: enhanced feedback inhibitor tolerance is determined by a single residue. Molecular plant 6(6):1996-1999. [Abstract]
  • Maurino VG & Weber AP (2013) Engineering photosynthesis in plants and synthetic microorganisms. Journal of experimental botany 64(3):743-751. [Abstract]
  • Maier A, Schrader A, Kokkelink L, Falke C, Welter B, Iniesto E, Rubio V, Uhrig JF, Hülskamp M, & Hoecker U (2013) Light and the E3 ubiquitin ligase COP1/SPA control the protein stability of the MYB transcription factors PAP1 and PAP2 involved in anthocyanin accumulation in Arabidopsis. The Plant journal : for cell and molecular biology 74(4):638-651. [Abstract]
  • Lota F, Wegmuller S, Buer B, Sato S, Bräutigam A, Hanf B, & Bucher M (2013) The cis-acting CTTC-P1BS module is indicative for gene function of LjVTI12, a Qb-SNARE protein gene that is required for arbuscule formation in Lotus japonicus. The Plant journal : for cell and molecular biology 74(2):280-293. [Abstract]
  • Kuhn A, Engqvist MK, Jansen EE, Weber AP, Jakobs C, & Maurino VG (2013) D-2-hydroxyglutarate metabolism is linked to photorespiration in the shm1-1 mutant. Plant biology 15(4):776-784. [Abstract]
  • Kern R, Eisenhut M, Bauwe H, Weber AP, & Hagemann M (2013) Does the Cyanophora paradoxa genome revise our view on the evolution of photorespiratory enzymes? Plant biology 15(4):759-768. [Abstract]
  • Heckmann D, Schulze S, Denton A, Gowik U, Westhoff P, Weber AP, & Lercher MJ (2013) Predicting C4 photosynthesis evolution: modular, individually adaptive steps on a Mount Fuji fitness landscape. Cell 153(7):1579-1588. [Abstract]
  • Hagemann M, Fernie AR, Espie GS, Kern R, Eisenhut M, Reumann S, Bauwe H, & Weber AP (2013) Evolution of the biochemistry of the photorespiratory C2 cycle. Plant biology 15(4):639-647. [Abstract]
  • Göhre V, Haag C, & Feldbrügge M (2013) RNA biology in fungal phytopathogens. PLoS pathogens 9(10):e1003617. [Abstract]
  • Fernie AR, Bauwe H, Eisenhut M, Florian A, Hanson DT, Hagemann M, Keech O, Mielewczik M, Nikoloski Z, Peterhansel C, Roje S, Sage R, Timm S, von Cammerer S, Weber AP, & Westhoff P (2013) Perspectives on plant photorespiratory metabolism. Plant biology 15(4):748-753. [Abstract]
  • Facchinelli F, Pribil M, Oster U, Ebert NJ, Bhattacharya D, Leister D, & Weber AP (2013) Proteomic analysis of the Cyanophora paradoxa muroplast provides clues on early events in plastid endosymbiosis. Planta 237(2):637-651. [Abstract]
  • Facchinelli F, Colleoni C, Ball SG, & Weber AP (2013) Chlamydia, cyanobiont, or host: who was on top in the menage a trois? Trends in plant science 18(12):673-679. [Abstract]
  • Eisenhut M, Pick TR, Bordych C, & Weber AP (2013) Towards closing the remaining gaps in photorespiration—the essential but unexplored role of transport proteins. Plant biology 15(4):676-685. [Abstract]
  • Denton AK, Simon R, & Weber AP (2013) C(4) photosynthesis: from evolutionary analyses to strategies for synthetic reconstruction of the trait. Current opinion in plant biology 16(3):315-321. [Abstract]
  • Cheng S, van den Bergh E, Zeng P, Zhong X, Xu J, Liu X, Hofberger J, de Bruijn S, Bhide AS, Kuelahoglu C, Bian C, Chen J, Fan G, Kaufmann K, Hall JC, Becker A, Brautigam A, Weber AP, Shi C, Zheng Z, Li W, Lv M, Tao Y, Wang J, Zou H, Quan Z, Hibberd JM, Zhang G, Zhu XG, Xu X, & Schranz ME (2013) The Tarenaya hassleriana genome provides insight into reproductive trait and genome evolution of crucifers. The Plant cell 25(8):2813-2830. [Abstract]
  • Bordych C, Eisenhut M, Pick TR, Kuelahoglu C, & Weber AP (2013) Co-expression analysis as tool for the discovery of transport proteins in photorespiration. Plant biology 15(4):686-693. [Abstract]
  • Bhattacharya D, Price DC, Chan CX, Qiu H, Rose N, Ball S, Weber AP, Arias MC, Henrissat B, Coutinho PM, Krishnan A, Zauner S, Morath S, Hilliou F, Egizi A, Perrineau MM, & Yoon HS (2013) Genome of the red alga Porphyridium purpureum. Nature communications 4:1941. [Abstract]

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2012

  • Schliesky S, Gowik U, Weber AP, & Bräutigam A (2012) RNA-Seq Assembly – Are We There Yet? Frontiers in plant science 3:220. [Abstract]
  • Rolauffs S, Fackendahl P, Sahm J, Fiene G, & Hoecker U (2012) Arabidopsis COP1 and SPA genes are essential for plant elongation but not for acceleration of flowering time in response to a low red light to far-red light ratio. Plant physiology 160(4):2015-2027.[Abstract]
  • Göhre V, Vollmeister E, Bolker M, & Feldbrügge M (2012) Microtubule-dependent membrane dynamics in Ustilago maydis: Trafficking and function of Rab5a-positive endosomes. Communicative & integrative biology 5(5):485-490. [Abstract]
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Heinrich Heine University
University of Cologne
Max Planck Institute for Plant Breeding Research
Forschungszentrum Jülich